staRdom: PARAFAC Analysis of EEMs from DOM

This is a user-friendly way to run a parallel factor (PARAFAC) analysis (Harshman, 1971) <doi:10.1121/1.1977523> on excitation emission matrix (EEM) data from dissolved organic matter (DOM) samples (Murphy et al., 2013) <doi:10.1039/c3ay41160e>. The analysis includes profound methods for model validation. Some additional functions allow the calculation of absorbance slope parameters and create beautiful plots.

Version: 1.1.23
Depends: R (≥ 4.0), ggplot2 (≥ 3.3.2), eemR (≥ 1.0.1), parallel (≥ 4.0)
Imports: dplyr (≥ 1.0.7), tidyr (≥ 1.1.3), stringr (≥ 1.4.0), pracma (≥ 2.3.3), zoo (≥ 1.8-9), tibble (≥ 3.1.3), multiway (≥ 1.0-6), GGally (≥ 2.1.2), graphics (≥ 4.0), doParallel (≥ 1.0.16), drc (≥ 3.0-1), foreach (≥ 1.5.1), data.table (≥ 1.14.0), matrixStats (≥ 0.60.1), MBA (≥ 0.0-9), cdom (≥ 0.1.0), R.matlab (≥ 3.6.2), readr (≥ 2.0), gtools (≥ 3.9), viridisLite (≥ 0.4)
Suggests: plotly, xlsx, knitr, kableExtra, askpass (≥ 1.1), httr (≥ 1.4.2), rmarkdown
Published: 2021-10-08
Author: Matthias Pucher [aut, cre], Daniel Graeber [aut, ctb], Stefan Preiner [ctb], Renata Pinto [ctb]
Maintainer: Matthias Pucher <matthias.pucher at wcl.ac.at>
BugReports: https://github.com/MatthiasPucher/staRdom/issues
License: AGPL
URL: https://cran.r-project.org/package=staRdom
NeedsCompilation: no
Citation: staRdom citation info
Materials: README
CRAN checks: staRdom results

Documentation:

Reference manual: staRdom.pdf
Vignettes: Correcting raw data, calculating peaks and indices in EEMS and absorbance (slope) parameters
PARAFAC analysis of EEM data to separate DOM components

Downloads:

Package source: staRdom_1.1.23.tar.gz
Windows binaries: r-devel: staRdom_1.1.23.zip, r-release: staRdom_1.1.23.zip, r-oldrel: staRdom_1.1.23.zip
macOS binaries: r-release (arm64): staRdom_1.1.23.tgz, r-release (x86_64): staRdom_1.1.23.tgz, r-oldrel: staRdom_1.1.23.tgz
Old sources: staRdom archive

Linking:

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