prider: Multiplexed Primer Design by Linear Set Coverage Approximation

Implementation of an oligonucleotide primer and probe design algorithm using a linearly scaling approximation of set coverage. A detailed description available at Smolander and Tamminen, 2021; <doi:10.1101/2021.09.06.459073>.

Version: 1.0.2
Imports: Rcpp (≥ 1.0.5), dplyr, tidyr, purrr, stringr, magrittr, tibble, blaster, gplots
LinkingTo: Rcpp
Published: 2021-09-13
Author: Manu Tamminen ORCID iD [aut, cre], Niina Smolander ORCID iD [aut]
Maintainer: Manu Tamminen <mavatam at utu.fi>
License: BSD_3_clause + file LICENSE
NeedsCompilation: yes
SystemRequirements: C++11
Materials: README
CRAN checks: prider results

Downloads:

Reference manual: prider.pdf
Package source: prider_1.0.2.tar.gz
Windows binaries: r-devel: prider_1.0.2.zip, r-devel-UCRT: prider_1.0.2.zip, r-release: prider_1.0.2.zip, r-oldrel: prider_1.0.2.zip
macOS binaries: r-release (arm64): prider_1.0.2.tgz, r-release (x86_64): prider_1.0.2.tgz, r-oldrel: prider_1.0.2.tgz

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