1.1-1 * fix “link-time-optimization” issues for CRAN submission

1.1-0 * fix argument error in a .C() call * read.odf() stores ODF header as a list in metadata * presentTime() added * vignette on subclassing oce added * sectionSmooth() handles output grid better, and offers 2 new methods * read.ctd.sbe() handles more column names * i386/windows gets map projections * imagep() handles combined flipy and ylim arguments differently

1.0-1 * Renamed 0.9-24, released with OAR book publication.

0.9-24 * read.odf() stores ODF header in metadata * remove makeSection() * make defunct: addColumn byteToBinary ctdAddColumn ctdUpdateHeader findInOrdered * make defunct: mapZones mapMeridians oce.as.POSIXlt oce.magic * byteToBinary(., endian=“little”) designated as defunct * as.tidem() added * read.odf() handles multiple NULL_VALUEs * flag improvements * rotateAboutZ() added * concatenate() added * read.woa() added * colormap() value has new item ‘colfunction’

0.9-23 * tidem() permits inferred constituents * tidem() follows T_TIDE phase convention * adorn argument removed from plot functions (after being defunct 1+ year) * deprecate findInOrdered()

0.9-22 * plot,section-method() can use external bathymetry * lowpass() added * ctdTrim() can isolate upcasts * deprecate byteToBinary() * address a CRAN NOTE about UTF-8 strings in data

0.9-21 * adpEnsembleAverage() added * mapCoordinateSystem() added * woce-exchange missing-value inference * woce-exchange autodetection, plus read all data types * download.amsr() updated for data-server change * download.met() added * as.ctd() can specify columns within argo data * read.adp.rdi() handles more file types and larger RDI files * read.odf() handles contradictory metadata better * oce.as.POSIXlt() deprecated * oceSetData() handles units better * address R_registerRoutines build-time warning * fix memory-usage error in coastlineCut()

0.9-20 * remove observatory object type (changed format, seldom-used type) * remove pangaea object type (undocumented format, seldom-used type) * improvements for BioArgo data * Spanish translation by Pablo Valdés * make read.gps() handle more files * deprecate ctdAddColumn() and ctdUpdateHeader() * download.topo() added and read.topo() updated to handle new formats * download.amsr() added * composite() added * addColumn() marked as deprecated * read.cm.s4() reads all data in file * as.cm() added * read.odf() handles Aanderaa current meter data * mapPlot() and mapAxis() get cex.axis parameter * subset(amsr) added; various other amsr improvements

0.9-19 * deprecate ‘adorn’ in plot functions * make read.ctd() obey missingValue (renamed) * improve map projections * add renameData() * improve support for SBE files * remove is.beam(), is.xyz(), is.enu() and coordinate(), since x[[“coordinate”]] now permits these simply * replace several function-style accessors with [[ style * fix test-suite error relating to an rgdal change * add handleFlags() as generic plus specifics for ctd and argo classes * use S4 documentation, e.g. ?‘plot,ctd-method’ instead of ?plot.ctd * add subset(argo, “adjusted”) * make read.argo() read all documented data and metadata fields * add trimString()

0.9-18 * improve plot.coastline() and mapPlot() * add support for G1SST satellite * all objects now have metadata items for units and flags * ctdTrim() method renamed: old A and B are new A; old C is new B * support more channels and features of rsk files * as.adp() added * convert argo objects to sections * makeSection() deprecated; use as.section() instead * read.adp.rdi() handles Teledyne/RDI vsn 23.19 bottom-track data * geodXyInverse() added; geod functions now spell out longitude etc * read.odf() speeded up by a factor of about 30 * add colour palettes from Kristen Thyng’s cmocean Python package * as.oce() added * rename ‘drifter’ class as ‘argo’ to recognize what it actually handles * add oceColorsViridis() * interpBarnes() has new argument ‘pregrid’ * binMean2D() has new argument ‘flatten’ * data(topoWorld) now has longitude from -179.5 to 180 * ODF2oce() added * read.odf() handles more data types * read.adp.rdi() reads more VmDas (navigational) data * ITS-90 is now the default temperature unit * ctd objects can have vector longitude and latitude * logger class renamed to rsk * bremen class added * coastlineCut() added * rgdal package used instead of local PROJ.4 source code * mapproj-style map projections eliminated

0.9-17 * remove an exit() call in a C function

0.9-16 * cite PROJ.4 contributors in DESCRIPTION * address package-build warnings; improve DESCRIPTION (thanks, BR)

0.9-15 * plot.echosounder() gets new argument ‘drawPalette’ * data(landsat) taken from ocedata (and shrunk) * data(nao) and data(soi) moved to ocedata * mapTissot() added * read.logger() with ctd-type data infers salinity if necessary * ctdTrim() can have “method” as a function * as.topo() can convert “bathy” objects from the marmap package * “+.section” renamed sectionAddStation() * oceApprox() renamed oce.approx(), with an alias for compatibility * oce.grid() added * “tdr” class renamed “logger” * swCSTp() added * swConductivity() now swThermalConductivity(); using Caldwell (1974). * many sw() functions handle eos=“gsw” libary(gsw) replaces teos() * curl() added * handle new NOAA ascii topography dataset type * mapGrid() added * data(soi) moved to ocedata package * lonlat2map() added * map2lonlat() made more accurate * permit proj4 style map projections * landsat-7 (and possibly 4 and 5) support * landsat decimation/plotting improvements * drifterGrid() added * mapDirectionField() added * mapArrows() added * read.index() added * utm2lonlat() and lonlat2utm() added * data(met) changed to time of Hurricane Juan

0.9-14 * fix compile-time warning * colormap() added, and functionality added to imagep() and drawPalette() * imagep() and drawPalette() new arg. ‘axisPalette’ (suggested C. Richards) * drawPalette() has new args: plot, pos, levels, and cex.axis * ctdDecimate() permits user-supplied method function * data(nao) added; data(soi) updated, and names improved in latter * landsat support added * plotProfile() and plotTS() get new argument ‘pt.bg’ * plot.section() grids the data if needed * rename ‘sealevelHalifax’ dataset as ‘sealevel’ * translate some axis names (Spanish, French, German and Mandarin) * plotProfile() now has ytype=“depth” * mapImage() and friends now demand a map exists first * runlm() added * mapScalebar() added * subset.topo() added * read.topo() now handles GEBCO netcdf files * decimate() now handles topo objects * reverse oce.colorsGebco colours for water * drawIsopycnals() and plotTS(): improve isopycnal labels * ctdDecimate() handles new method ‘unesco’ * coastline improvements (now 3 resolutions) * webtide() improvements * read.observatory() added * read.ctd.itp() added * mapImage() speeded up (60X in 1deg SST example) * binApply1D() and binApply2D() added * binCount1D(), binMean1D(), binCount2D(), and binMean2D() added * numberAsHMS() added * gps data type added (provisionally) * various functions: reorder arguments putting longitude before latitude * magneticField() replaces magneticDeclination() * ungrid() added * mapPlot(): improve zone and meridian aesthetics * detrend() returns list with detrend vector and coefs * decodeTime() improvements * interpBarnes() has new arg ‘trim’ * standardDepths() added * mapLongitudeLatitudeXY() added * read.ctd.woce() now accepts a format used once by Arctic scientists * swRrho() added * plotProfile() now accepts type=“o” * read.adv.nortek(): read salinity * ctdDecimate(): fix bug for NULL columns [issue 327] * plot.section() now chooses best coastline file * swPressure() added * ctdFindProfiles() added * as.ctd(): new arguments filename etc * remove oceBisect(), which merely reproduces uniroot() * move large/specialized datasets to library(ocedata)

0.9-13 * prepare for an upcoming release of R-devel

0.9-12 * move vignette source directory

0.9-11 * numberAsPOSIXct() now handles types “sas” and “spss” * data(turbulence) added * plot.echosounder(): use white for below-threshold values * plot.echosounder(): add arg ‘beam’ to e.g. display Sv * read.echosounder(): handle dual-beam and split-beam data * read.echosounder(): decode bottom-pick * swSoundAbsorption() * read.adp: improve doc regarding variable orientation of RDI files

0.9-10 * improve line breaks in some help pages (thanks, B. Ripley)

0.9-9 * mapPlot() uses … graphical parameters (e.g. cex) in labelling axes * fix recent bug in reading CNV files (issue 318) * plotTS(…, mar=NULL) now avoids setting par(mar)

0.9-8 * fix memory error in teos handler (thanks, B. Ripley)

0.9-7 * make ctdTrim() work in R 3.0 * support for adp vmdas nav data (coded by Clark Richards) * approx3d(): added * drawPalette(): new arg ‘fullpage’ * plot.lobo(): add ‘which’ argument * read.coastline.openstreetmap() added * data(levitus) added * plot.coastline(): new arguments ‘projection’ etc to use mapPlot() * mapContour(): permit first argument to be a ‘topo’ object * mapPlot(): add arguments axes, bg, fill, and drawBox

0.9-6 * address compilation error on Windows-64 platform * make some long-running operations more interruptible * oceApprox(): permit equal x values [issue 279]

0.9-5 * halve package check time

0.9-4 * as.section() added * add data(endeavour) * add map projections, with provisional functions mapPlot() etc * plot.ctd(): add argument ‘add’ * add crude mapping support * interpBarnes(): add args ‘xgl’ and ‘ygl’ * read.section(): add ‘directory’ argument * sectionSmooth(): add ‘barnes’ method * oce.plot.ts() and oce.axis.POSIXct(): add tformat argument * read.aquadopp() and cousins added [issues 253 and 258] * read.ctd() guesses waterDepth if not supplied [issue 253] * plotTS(): extend isopycnal range [issue 252] * plot.section() contouring improved * data(oceans) added * data(papa) added * fillGap() works on matrices as well as vectors * read.lobo() is more flexible on column names * imagep(…, axes=FALSE): no longer plots axis box [issue 249] * oce.plot.ts(): alter time auto-ranging method * oceBisect(): increase generality of function whose root is sought * plotTS(): clean axes after isopycnals drawn * teos10: update test values (with help from PB) * read.adp.nortek(): handle missing ‘to’ argument as documented * beamUnattenuateAdp() renamed beamUnspreadAdp() * plotTS() and plotProfile(): permit type=‘n’ * plotProfile(ytype=‘z’): fix bug in y label * improve error message if TEOS-10 is missing

0.9-3 * example(riley): remove error in R-devel * plot.ctd(…, which=7) improvement * swSCTp(): accept conductivity in mS/cm and S/m * as.ctd(): accept TEOS-10 values SA and CT * make TEOS routines more resistant to unphysical values

0.9-2 * remove unwanted files during build process

0.9-1 * pwelch(): fix bug in frequency * tidem(): add argument ‘regress’ * rename oce.plot.sticks() as plotSticks(); delete stickplot() * use S4 style for all plot() methods * data(giss) added * data(topo2) added * plotPolar() added * oce.magic() new name for magic(); renamed oceMagic() in 0.9-15 * errorBars() added * numberAsPOSIXct() add a leap second for July 2012

0.8-10 * plot.topo(): automatic cut-point shift * add support for Nortek aquadopp-profiler instruments * oce.contour() added * lisst class added * plotTaylor() added * oce.as.raw() added * binmap() added

0.8-9 * make the newly-added TEOS-10 functions compile on Windows

0.8-8 * data(cm) added * plot.coastline(): improve argument ‘geographical’ * add prettyPosition() * add grad() * add (preliminary) support for TEOS-10, installed separately * add integrateTrapezoid() * plotTS(): add argument teos * add teos() as an interface to the TEOS-10 library * add moonAngle() plus other astronomy functions, e.g. julianDay()

0.8-7 * plotInset(): remove ‘bg’ and ‘fg’ arguments * plotTS(): add ‘bg’ argument * rename ‘dt’ object and functions to ‘tdr’ * plotTS(): add argument ‘inset’ * read.adp.rdi(): fix a bug in bottom-tracking; add soundSpeed vector * data(echosounder) created * formatPosition() created * plot(echosounder): new arguments atTop and labelsTop * adp objects now also hold ‘percent good’ for RDI instruments * plot.drifter(): improve multi-panel plots * imagep(): add argument ‘missingColor’ * imagep() and drawPalette(): add arguments ‘labels’ and ‘at’

0.8-6 * imagep(): permit POSIXt type for zlim

0.8-5 * reconstruct data(ctd) so plot will focus maps better * plotInset() added * grid() works for oce-based time axes * imagep(…, filledContours): obey ylab argument * subset(): permit subsetting ADP by pressure * oce.plot.ts(): obey arguments xaxt and yaxt * improve support for shapefile coastlines

0.8-4 * replace ‘center’ argument for plotting topography and coastline with clatitude and clongitude * add ‘echosounder’ class * fullFilename(): handle URLs properly * ADV objects: add access to slow variables (e.g. headingSlow)

0.8-3 * add ‘met’ class * subset.oce() handles section objects * draw.section(): permit xtype=“latitude” or “longitude” * imagep() has drawPalette=“space” option

0.8-2 * fix bug in read.coastline(), reversing lon and lat [issue162] * fix bug in S4 adp validity checker * geodDist(): add argument ‘alongPath’ * remove compilation warning about doc for summary.ctd()

0.8-1 * switch to S4 classes, and add new accessors and ‘show’ functions. * add support for RBR ‘rsk’ files * plot.section() now uses ‘col’ if supplied

0.7-1 * improve oce.colorsJet() * improve plotProfile() vertical range with missing data * add data(drag) * plotProfile() and plot.ctd(): add xtype=“spice” * add data(geosecs235) * plotProfile() and plot.ctd(): add argument ‘keepNA’ * as.ctd(): add arguments ‘other’ and ‘missingValue’ * read.lobo(): tolerate more formats, including missing velocities * add data(schmitt) * add accessor spice() * handle O2 and nutrients in CTD data and sections * swSCTp(): use surface pressure as a default * plotTS(): add arguments inSitu and referencePressure * plotTS(): handle section objects * fix bugs reported in issues 150, 151, 153, 155, 156 * imagep(): change default drawContours to FALSE

0.6-1 * add ‘adv’ dataset * generalize swN2() by adding new arg ‘derivs’ * oce.plot.ts() gets new arg ‘axes’ * add accessor distance() * rename to plotTS() and plotScan() to avoid S3 check warnings * switch makeFilter’s argument asKernel to TRUE

0.5-1 * add support for ARGO drifters * latitude() and longitude(): new argument to repeat byDepth * addCtdColumn(): replace if column already exists * add CTD accessors for lat, lon, pressure, salinity, temperature

0.4-1 * plot.sealevel(): only show 3 panels, for clarity * plot.ctd(): add argument ‘type’ * imagep(): handle x, y, and z as image() does * oce.plot.ts(): inferred ylim matches data range within provided xlim * read.adv.nortek(): handle extra analog data * add CTD accessors longitude(), latitude(), time(), elevation(), etc

0.3-1 * add read.oce.odf() * add findInOrdered * generalize tidem() argument list * read.adv.nortek(): handle burst-mode data * add datasets wilson, redfieldNP, redfieldNC, redfieldPlankton, and riley * change data(ctd) to be derived from data(ctdRaw) * change to monitor=FALSE for all reading functions * add accessor functions heading(), latitude(), longitude(), pitch(), pressure(), processingLog(), roll(), salinity(), temperature(), time(), and velocity() * rename history as processingLog * flatten data objects to be 1 level thick (for future matlab exports) * add threenum() added, and use it in all summaries (for speed)

0.2-3 * head.adp() added * tail.adp() added * extract() added

0.2-2 * velocityStatistics() added * new names: oceApprox() integerToAscii() rangeLimit() ctdRaw * topoInterpolate() added * numberAsPOSIXct(): add type ‘argos’ * rename beamAttenuateAdp() as beamUnattenuateAdp()

0.2-1 * camel-case function and argument names (and the NEWS file)

0.1-83 * add binAverage() * fillGap(): add ‘rule’ argument (analogous to same for approx()) * add rescale() * read.pt(): fix timing error; use as.pt() to create return value * add as.pt() * read.adp.rdi() uses checksums * number.as.POSIXct(type=“gps”): account for leap seconds

0.1-82 * remove warning that occurs for R 2.13.0 (alpha) * number.as.POSIXct(): accept GPS times * rename e.g. adv.2enu() as to.enu.adv() * speed up conversion of ADP and ADV to enu by more than a factor of 10 * change RDI coordinate handling * rename match.bytes() as matchBytes() * add drawPalette() * remove matlab2POSIXt(), now a sub-case of number.as.POSIXct() * number.as.POSIXct(): added * oceBiset(): added * despike(): add argument ‘action’ * detrend(): added * read.adp.sontek(): handle PCADP type * read.adp.sontek.serial(): added * read.section(): handle WOCE quality flags for salinity * retime(): added * read.adv.sontek.serial(): correct error in class of ‘a’ and ‘c’ * despike(): use string value for argument ‘method’ * logger.toc(): fix bug in discovering files ranging over days * as.ctd(): make temperature and salinity into vectors, if not already * plot.TS(): add argument ‘use.smoothScatter’ * oce.debug(): flush the console after printing a message * sw.theta(): rename the method possibilities, to lower case * in some sw functions, rename ‘pref’ as ‘reference.pressure’ * read.ctd(): fix bug in getting start.time for some time formats * pwelch() added * plot.sealevel(): make y axis obey range in data subset, if xlim is given * adp.2enu() added * coastline.world: improve resolution by a factor of 4 or so * read.ctd.woce(): infer water depth as max(pressure) if not in header * section.smooth(): handle misordered stations; handle missing values better * plot.section(): allow strings for ‘which’; improve contouring * plot.ctd() and plot.profile(): add ‘use.smoothScatter’ argument * coriolis(): improve omega value

0.1-81 * add despike() * add range.limit() * add unabbreviate.time() * add support for bottom-tracking RDI ADCPs * add support for interocean ‘s4’ current meters * add unwrap.angle() * read.adv.nortek(): detect the velocity range * add processing.log.add(), an alternative to processing.log.append() * plot.ctd(): add more plot types; which=9 for salinity, not density * as.ctd(): improve flexibilty * predict.tidem(): add ‘newdata’ argument * adv.2enu() added * adp.xyz2enu(): make it correct for heading.bias * make.filter(): can now produce tskernel type * improve (but temporarily limit) fill.gap * plot.adp(): add ‘use.layout’ argument * window.oce() added * make objects remember full filename, not just local filename (issue8) * plot.tidem(): remove argument ‘plot.type’, using ‘which’ instead * read.pt(): add arguments from, by, and to * fix issue 57 [read.adp.rdi() read the heading incorrectly] * add “rr” method to ctdDecimate() * oceApprox() added * topoWorld dataset added * plot.ctd(): by default, make coastlines extend to box boundaries * reformulate sun.angle in R * fix google-code issue 56 [plot.topo() should accept land.z=NULL] * fix google-code issue 55 [plot.topo() could go past poles] * fix google-code issue 54 [plot.topo() was resetting par() on exit] * fix google-code issue 53 [interp.barnes() gives poor error msg for mismatched x and y] * fix google-code issue 52 [plot.section() draws incorrect bottom shape]

0.1-80 * add sun.angle [not tested yet; needs R reformulation] * fix google-code issue 51 [summary.section() does not report water depth] * fix google-code issue 50 [non-bug relating to sun elevation] * fix google-code issue 49 [demo(TS) broken]

0.1-79 * fix google-code issue 48 [oce.plot.sticks() ignored page ratio] * fix google-code issue 47 [cannot read new MEDS sealevel format]

0.1-78 * add data(RRprofile) * to plot.TS(), add arguments lwd.rho and lty.rho

0.1-77 * refactor adp code wrt transformation matrices * add matrix.smooth() * improve labels for oce.axis.POSIXct() * set default for ‘debug’ argument to getOption(“oceDebug”) in all functions * plot.profile(): add argument ytype; change ‘type’ to ‘xtype’ * add swZ() * add oce.smooth() * add read.adv(), etc., supporting Nortek and Sontek devices * add read.adp(), etc., supporting Nortek, RDI and Sontek devices * add oce.plot.ts() * add imagep() * add bcd2integer() * add matlab2POSIXt() * to most plot functions, add ‘mgp’ and ‘mar’ arguments * plot.pt(): add plim and Tlim arguments * gravity(): give default for latitude argument * plot.sealevel(): remove argument focus.time and add argument which * rename tdr functions as pt, to reflect oral convention * add geod.xy() * add argument ‘mgp’ to all plotting functions * use abbreviations for axis names if space is tight * add argument ‘adorn’ to all plot() functions * add oce.colorsTwo(), oce.colorsJet(), and oce.colorsPalette() * add byte2binary() * add “lty.grid” to all CTD plotting functions * add “+.section”, a more convenient way to build sections from stations * rework summary() for all existing objects * as.sealevel(): rename sampling.interval as deltat

0.1-76 * sw.N2(): make it tolerate NAs; adjust df to make result smoother * add makeFilter() * add decimate(), which may eventually replace ctd.decimate() * read.tdr(): handle 5-column data files; add tz argument * plot.profile(): add types sigma+dpdt and sigma+time * ctdTrim(): add pmin parameter * plot.ctd(): add Slim, Tlim, plim, lonlim, latlim args; add maps * add coastline.sle dataset * plot.TS(): fix isopycnal labels for fresh water; add args Slim, Tlim * read.ctd(): make it understand another SBE format * add parseLatlon() * oce.edit(): add argument ‘action’ * add oce.write.table() * add fillGap()

0.1-75 * add addColumn() * add undriftTime() * add tdrPatm() * make readTdr() gather serial no. info; show this on plot.pt() * switch to recommended verion-number format * remove section.subset(), replaced by subset() * improve log items in functions that read and assemble oce objects http://code.google.com/p/r-oce/issues/detail?id=38 * add subset.oce() * add header() * add argument ‘which’ to read.rbrdtr() * make read.rbrdtr() understand headers better * add arguments ‘xtype’ and ‘ytype’ to plot.section() * improve accuracy of bottom drawn by plot.section() * add section.smooth() * fix bug making section.smooth() fail if <4 good data at a level http://code.google.com/p/r-oce/issues/detail?id=36 * fix bug making summary.ctd() fail for results of section.smooth() http://code.google.com/p/r-oce/issues/detail?id=34 * fix bug making sw.dynamic.height() choke on empty stations http://code.google.com/p/r-oce/issues/detail?id=33 * fix bug making plot.section() die if x is unordered http://code.google.com/p/r-oce/issues/detail?id=36 * rename rbrpt functions to tdr functions, improving generality

0.1.74 * add argument “src” to as.ctd() http://code.google.com/p/r-oce/issues/detail?id=22 * plot.section() RHS axis needs tics http://code.google.com/p/r-oce/issues/detail?id=32 * trim axis whitespace in plot.profile() and plot.TS() http://code.google.com/p/r-oce/issues/detail?id=31 * make read.oce() understand WOCE section type http://code.google.com/p/r-oce/issues/detail?id=30 * speed up swSpice() http://code.google.com/p/r-oce/issues/detail?id=29 * add read.pt(), summary.pt(), plot.pt(), and ptTrim() * make plot.TS() isopycnal label size be same on top and right sides http://code.google.com/p/r-oce/issues/detail?id=26 * add lwd argument to plot.profile() * give plot.section() ability to control contour levels and labels * give plot.section() tics for station-location

0.1.73 * plot.topo() narrows autoscale to xlim-ylim region, if provided * add plot.ctd() ‘textpanel’ option, and put the profiles in the same row * fix bug in plot.profile() to let it take Slim,…, as args http://code.google.com/p/r-oce/issues/detail?id=25 * fix bug in plot.profile() font size http://code.google.com/p/r-oce/issues/detail?id=24 * fix bug in plot.profile(type=“S_T”) positioning http://code.google.com/p/r-oce/issues/detail?id=23 * fix bug in section plot (bottom was missing) http://code.google.com/p/r-oce/issues/detail?id=21 * fix bug in size of salinity axis label for plot.ctd() * use pch=21 for TS plots (so data density is more visible)

0.1.72 * add interp.barnes()

0.1.71 * fix bug in makeSection (ignored the list, if a list provided) http://code.google.com/p/r-oce/issues/detail?id=18&q=label:Type-Defect * add oce.edit(), later renamed oceEdit() * add topoMaritimes dataset * add read.topo(), plot.topo(), and summary.topo() * add gebcoColors() … renamed oce.colorsGebco() in version 0.1.77 * make plot.section() check that pressures coincide

0.1.70 * plot.TS(): make isopycnal list work better for nearly-fresh water * trimCtd(): improve equilibration-phase deletion * read.ctd(): handle cases without cruise information or scan column * permit setting xlab and ylab in plot.TS() * make processing log timestamps be in GMT * add as.windrose() and plot.windrose() * add sealevel.tuk sea-level dataset * add tidem(), predict.tide(), summary.tide(), plot.tide(), data(tidedata) * establish a uniform form for objects created by “read” and “as” * let swRho() and similar functions take a ctd object as a single argument * add swDynamicHeight() * make section.grid() and ctd.decimate() extrapolate to surface * add summary.oce() * make all objects inherit from a new class “oce” * fix google-code issue 12: read.sealevel() had a hard-wired filename

0.1.69 * modify documentation slightly * start a migration to more uniform object structures * rename as.CTD() to as.ctd(), to make it consistent with similar functions * add read.section() * add sectionGrid(), which only grids in p at the moment * add a03 dataset (renamed ‘section’ in 0.9-13) * fix SF bug 1833719: warnings from read.ctd() * fix google-code issue 8: read.coastline() not producing data * improve ability of trimCtd() to ignore spurious initial data * add “connectPoints” option to plot.TS() * add “station” item to “ctd” object * change as.CTD() to produce sigma.theta instead of sigma

0.1.68 * add coastline.world; increase resolution of coastline.maritimes * plot.TS() no longer rotates the RH margin isopycnal labels

0.1.67 * allow swRho() and similar take matrices as arguments for S, T, etc

0.1.66 * fix bug in plot.TS() that prevented it from showing some isopycnals

0.1.65 * switch to UNESCO formulation for sw potential temperature by default * prevent warnings with C90 compiler on some machines

0.1.64 * add read.oce(), a generic function for reading several oceanographic files * make read.ctd() understand WOCE-exchange files * make read.sealevel() understand comma-separated data from MEDS * make plot.sealevel() skip spectral graphs if timeseries has NA values * improve aesthetics of plot.ctd() * extend plot.sealevel() by adding focus.time argument * add ctdDecimate() * add oce.as.POSIXlt() * add latlonFormat(), latFormat(), and lonFormat() * add as.coastline() * add make.section() * add summary.section() * add plot.section() * add data(section)

0.1.63 * add swSoundSpeed()

0.1.62 * add historyAppend() (later named processingLogAppend()) and related code * improve ctdTrim()

0.1.61 * add rudimentary read/summary/plot functions for lobo datasets

0.1.60 * add vignette; address some build-stage warning messages

0.1.59 * set up data files to permit latin1 encoding of some content

0.1.58 * rename all seawater-related functions to e.g. swTheta(), to allow for atmospheric analogs

0.1.57 * make as.CTD() accept length(p)=1, e.g. for surface plots

0.1.56 * make read.coastline() handle S files

0.1.55 * keep swTheta() from complaining if length(p) = 1

0.1.54 * add swAlpha() and swBeta()

0.1.53 * add swAlphaOverBeta()

0.1.52 * document the use of df in swN2(), plot.ctd(), etc.

0.1.51 * permit swRho() (and similar) to take NAs in args (bug B32)

0.1.50 * permit swRho() and descendants to take scalar pressure.

0.1.49 * add as.CTD()

0.1.48 * add “UNESCO1983” formulation to swTheta() as an alternative

0.1.47 * speed up swTheta() by moving vector work from R to C

0.1.46 * make geodDist() accept a vector for location 1 and a scalar for location 2

0.1.45 * make read.coastline() understand matlab and Splus formats

0.1.44 * make plot.coastline() scale lat and lon correctly

0.1.43 * add read.coastline(), summary.coastline(), and plot.coastline()

0.1.42 * add as.sealevel()

0.1.41 * add read.sealevel(), summary.sealevel(), and plot.sealevel()

0.1.40 * add name option to plot.ctd.scan()

0.1.39 * add lapse.rate()

0.1.38 * fix B27 (header not updated for columns added during read.ctd)

0.1.37 * rename as ctdTrim() * rename to ctdWrite()

0.1.36 * add write.ctd() * add ctdAddColumn() * add ctdUpdateHeader()

0.1.35 * add plot.ctd.scan()

0.1.34 * make read.ctd() calculate S if missing but C, T, and p are given * add swSCTp()

0.1.33 * add swConductivity()

0.1.32 * rename to swRho()

0.1.31 * use namespace

0.1.30 * add oce.viscosity()

0.1.29 * fix B23 (not done yet) * fix B22 (not done within oce; done at system level)

0.1.28 * add pressure method to trimCtd()

0.1.27 * vectorize swRho() since it was too slow on large datasets

0.1.26 * make demo(oce.ctd) print data

0.1.25 * fix some documentation errors that the 2.0.0 CHECK noticed

0.1.24 * profiles have correct y-axis * OSX port, but must first do e.g. export PKG_LIBS=“-L/sw/lib”

0.1.23 * OSX port (you must first do export PKG_LIBS=“-L/sw/lib”)

0.1.22 * add trim.ctd()

0.1.21 * permit lat/lon with the “N”-type indicator at start

0.1.20 * fix bug B16 (label the isopycnals on TS diagram)

0.1.19 * make read.ctd handle more file types

0.1.18 * add oceCoriolis, oceDepth, oceGravity, oceTFreeze

0.1.17 * add oceSpecificHeat oce.N2; fix bug B18

0.1.16 * get data(ctd) working

0.1.15 * add oceSTRho

0.1.14 * fix bug B15 (maybe)

0.1.13 * add oceTSRho

0.1.12 * fix bugs B10, B11, and B13

0.1.11 * fix bugs B6, B7, and B12

0.1.10 * add geodDist() * add plot.ctd(), which is rudimentary for now * fix bug B8

0.1.9 * add spice() function

0.1.8 * permit all eos functions to handle missing values * fix bug B4

0.1.7 * add summary(ctd) method. * make read.ctd() return an object of type ctd. * get tests/ working.

0.1.6 * create tests/oce.test1.R

0.1.5 * add oceSigma(), oceSigmaT(), oceSigmaTheta()

0.1.4 * permit various EOS functions to handle lists * fix bug B3

0.1.3 * add ocerho()

0.1.2 * fix file-path bug * fix bug B2

0.1.1 * add theta() * fix bug B1

0.1.0 * add read.ctd()