nucim: Nucleome Imaging Toolbox

Tools for 4D nucleome imaging. Quantitative analysis of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy. See Volker J. Schmid, Marion Cremer, Thomas Cremer (2017) <doi:10.1016/j.ymeth.2017.03.013>.

Version: 1.0.11
Depends: R (≥ 3.0.0), EBImage, bioimagetools (≥ 1.1.4)
Imports: fields, parallel, stringr
Suggests: knitr, rmarkdown, R.rsp
Published: 2021-06-10
Author: Volker Schmid [aut, cre]
Maintainer: Volker Schmid <volker.schmid at lmu.de>
BugReports: https://github.com/bioimaginggroup/nucim/issues
License: GPL-3
URL: https://bioimaginggroup.github.io/nucim/
NeedsCompilation: no
SystemRequirements: tiff fftw libcurl openssl
Citation: nucim citation info
Materials: README NEWS
CRAN checks: nucim results

Downloads:

Reference manual: nucim.pdf
Vignettes: Chromatin compaction classification using DAPI intensity
Workflow for nucleome analysis of many 3D SIM images
Workflow for 3D SIM nucleome analysis
Package source: nucim_1.0.11.tar.gz
Windows binaries: r-devel: nucim_1.0.11.zip, r-release: nucim_1.0.11.zip, r-oldrel: nucim_1.0.11.zip
macOS binaries: r-release (arm64): nucim_1.0.11.tgz, r-release (x86_64): nucim_1.0.11.tgz, r-oldrel: nucim_1.0.11.tgz
Old sources: nucim archive

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