amanida: Meta-Analysis for Non-Integral Data

Combination of results for meta-analysis using significance and effect size only. P-values and fold-change are combined to obtain a global significance on each metabolite. Produces a volcano plot summarising the relevant results from meta-analysis. Vote-counting reports for metabolites. And explore plot to detect discrepancies between studies at a first glance.

Version: 0.1.0
Depends: R (≥ 4.0)
Imports: magrittr (≥ 1.5), tibble (≥ 3.0.0), dplyr (≥ 1.0.0), readr (≥ 1.0.0), readxl (≥ 1.0.0), ggplot2 (≥ 3.3.0), ggrepel (≥ 0.9.0), methods (≥ 3.6.0), stats (≥ 3.6.0), tidyr (≥ 1.1.0), rmarkdown (≥ 2.9.0), kableExtra (≥ 1.3.0), knitr (≥ 1.33), tidyverse (≥ 1.3.0)
Suggests: testthat, vdiffr, markdown
Published: 2021-08-03
Author: Maria Llambrich ORCID iD [aut, cre], Eudald Correig [aut], Raquel Cumeras [aut]
Maintainer: Maria Llambrich <maria.llambrich at urv.cat>
License: GPL-3
URL: https://github.com/mariallr/amanida
NeedsCompilation: no
Materials: README
In views: MetaAnalysis
CRAN checks: amanida results

Documentation:

Reference manual: amanida.pdf
Vignettes: amanida_UserGuide

Downloads:

Package source: amanida_0.1.0.tar.gz
Windows binaries: r-devel: amanida_0.1.0.zip, r-release: amanida_0.1.0.zip, r-oldrel: amanida_0.1.0.zip
macOS binaries: r-release (arm64): amanida_0.1.0.tgz, r-release (x86_64): amanida_0.1.0.tgz, r-oldrel: amanida_0.1.0.tgz
Old sources: amanida archive

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