EmbedSOM: Fast Embedding Guided by Self-Organizing Map

Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) <doi:10.1101/496869>.

Version: 1.9.1
Depends: R (≥ 3.2)
Suggests: ggplot2, Matrix, igraph, Rtsne, umap, uwot, knitr, rmarkdown
Published: 2019-08-19
Author: Mirek Kratochvil [aut, cre], Sofie Van Gassen [cph], Britt Callebaut [cph], Yvan Saeys [cph], Ron Wehrens [cph]
Maintainer: Mirek Kratochvil <exa.exa at gmail.com>
License: GPL (≥ 3)
URL: https://bioinfo.uochb.cas.cz/embedsom
NeedsCompilation: yes
Materials: README
CRAN checks: EmbedSOM results

Downloads:

Reference manual: EmbedSOM.pdf
Vignettes: EmbedSOM basic embedding
Package source: EmbedSOM_1.9.1.tar.gz
Windows binaries: r-devel: EmbedSOM_1.9.1.zip, r-release: EmbedSOM_1.9.1.zip, r-oldrel: EmbedSOM_1.9.1.zip
OS X binaries: r-release: EmbedSOM_1.9.1.tgz, r-oldrel: EmbedSOM_1.9.1.tgz
Old sources: EmbedSOM archive

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