CRAN Package Check Results for Package genBaRcode

Last updated on 2020-01-23 09:52:01 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.2 8.55 209.13 217.68 OK
r-devel-linux-x86_64-debian-gcc 1.2.2 7.74 160.65 168.39 OK
r-devel-linux-x86_64-fedora-clang 1.2.2 263.08 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.2 260.94 OK
r-devel-windows-ix86+x86_64 1.2.2 39.00 267.00 306.00 OK
r-devel-windows-ix86+x86_64-gcc8 1.2.2 31.00 219.00 250.00 OK
r-patched-linux-x86_64 1.2.2 5.86 183.82 189.68 OK
r-patched-solaris-x86 1.2.2 343.90 OK
r-release-linux-x86_64 1.2.2 8.08 179.93 188.01 OK
r-release-windows-ix86+x86_64 1.2.2 14.00 195.00 209.00 OK
r-release-osx-x86_64 1.2.2 ERROR
r-oldrel-windows-ix86+x86_64 1.2.2 9.00 194.00 203.00 OK
r-oldrel-osx-x86_64 1.2.2 ERROR

Check Details

Version: 1.2.2
Check: package dependencies
Result: NOTE
    Imports includes 22 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [6s/5s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     > test_check("genBaRcode")
     ── 1. Error: (unknown) (@test_raw_data_functions.R#3) ─────────────────────────
     package 'GenomeInfoDb' could not be loaded
     Backtrace:
     1. base::library(ShortRead)
     2. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
     3. base::library(...)
     4. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 17 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 1 ]
     1. Error: (unknown) (@test_raw_data_functions.R#3)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘genBaRcode_GUI_Vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘genBaRcode_GUI_Vignette.Rmd’
    
    --- re-building ‘genBaRcode_Vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
    Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
    there is no package called 'GenomeInfoDbData'
    --- failed re-building ‘genBaRcode_Vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘genBaRcode_Vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.2.2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘ShortRead’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-osx-x86_64