CRAN Package Check Results for Package gamboostLSS

Last updated on 2022-01-26 19:50:33 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-5 9.30 305.60 314.90 OK
r-devel-linux-x86_64-debian-gcc 2.0-5 8.83 224.61 233.44 OK
r-devel-linux-x86_64-fedora-clang 2.0-5 373.83 OK
r-devel-linux-x86_64-fedora-gcc 2.0-5 366.78 OK
r-devel-windows-x86_64-new-UL 2.0-5 92.00 366.00 458.00 OK
r-devel-windows-x86_64-new-TK 2.0-5 OK
r-patched-linux-x86_64 2.0-5 17.32 289.78 307.10 OK
r-release-linux-x86_64 2.0-5 12.43 286.59 299.02 OK
r-release-macos-arm64 2.0-5 OK
r-release-macos-x86_64 2.0-5 OK
r-release-windows-ix86+x86_64 2.0-5 28.00 154.00 182.00 ERROR
r-oldrel-macos-x86_64 2.0-5 OK
r-oldrel-windows-ix86+x86_64 2.0-5 26.00 230.00 256.00 ERROR

Additional issues

donttest

Check Details

Version: 2.0-5
Check: tests
Result: ERROR
     Running 'bugfixes.R' [6s]
     Running 'regtest-families.R' [14s]
     Running 'regtest-gamboostLSS.R' [12s]
     Running 'regtest-glmboostLSS.R' [0s]
     Running 'regtest-mstop.R' [0s]
     Running 'regtest-noncyclic_fitting.R' [0s]
     Running 'regtest-stabilization.R' [0s]
     Running 'regtest-stabsel.R' [0s]
    Running the tests in 'tests/regtest-glmboostLSS.R' failed.
    Complete output:
     > ###
     > # check glmboostLSS()
     >
     > require("gamboostLSS")
     Loading required package: gamboostLSS
     Warning message:
     In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'gamboostLSS'
     > require("gamlss")
     Loading required package: gamlss
     Warning message:
     In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'gamlss'
     >
     > set.seed(1907)
     > n <- 5000
     > x1 <- runif(n)
     > x2 <- runif(n)
     > mu <- 2 -1*x1 - 3*x2
     > sigma <- exp(-1*x1 + 3*x2)
     > df <- exp(1 + 3*x1 + 1*x2)
     > y <- rTF(n = n, mu = mu, sigma = sigma, nu = df)
     Error in rTF(n = n, mu = mu, sigma = sigma, nu = df) :
     could not find function "rTF"
     Execution halted
    Running the tests in 'tests/regtest-mstop.R' failed.
    Complete output:
     > ###
     > # test functionality of multivariate mstop
     >
     > #detach("package:gamboostLSS", unload = TRUE)
     > require(gamboostLSS)
     Loading required package: gamboostLSS
     Warning message:
     In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'gamboostLSS'
     >
     > ### create some data first
     > set.seed(1907)
     > x1 <- rnorm(1000)
     > x2 <- rnorm(1000)
     > x3 <- rnorm(1000)
     > x4 <- rnorm(1000)
     > x5 <- rnorm(1000)
     > x6 <- rnorm(1000)
     > mu <- exp(1.5 +1 * x1 +0.5 * x2 -0.5 * x3 -1 * x4)
     > sigma <- exp(-0.4 * x3 -0.2 * x4 +0.2 * x5 +0.4 * x6)
     > y <- numeric(1000)
     > for( i in 1:1000)
     + y[i] <- rnbinom(1, size = sigma[i], mu = mu[i])
     > dat <- data.frame(x1, x2, x3, x4, x5, x6, y)
     >
     >
     > ## check if model with different mstops is what we expect
     > model <- glmboostLSS(y ~ ., families = NBinomialLSS(), data = dat,
     + control = boost_control(mstop = 10),
     + center = TRUE)
     Error in glmboostLSS(y ~ ., families = NBinomialLSS(), data = dat, control = boost_control(mstop = 10), :
     could not find function "glmboostLSS"
     Execution halted
    Running the tests in 'tests/regtest-noncyclic_fitting.R' failed.
    Complete output:
     > require("gamboostLSS")
     Loading required package: gamboostLSS
     Warning message:
     In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'gamboostLSS'
     >
     > ###negbin dist, linear###
     >
     > set.seed(2611)
     > x1 <- rnorm(1000)
     > x2 <- rnorm(1000)
     > x3 <- rnorm(1000)
     > x4 <- rnorm(1000)
     > x5 <- rnorm(1000)
     > x6 <- rnorm(1000)
     > mu <- exp(1.5 + x1^2 +0.5 * x2 - 3 * sin(x3) -1 * x4)
     > sigma <- exp(-0.2 * x4 +0.2 * x5 +0.4 * x6)
     > y <- numeric(1000)
     > for (i in 1:1000)
     + y[i] <- rnbinom(1, size = sigma[i], mu = mu[i])
     > dat <- data.frame(x1, x2, x3, x4, x5, x6, y)
     >
     > #fit models at number of params + 1
     >
     > #glmboost
     > model <- glmboostLSS(y ~ ., families = NBinomialLSS(), data = dat,
     + control = boost_control(mstop = 3), method = "noncyclic")
     Error in glmboostLSS(y ~ ., families = NBinomialLSS(), data = dat, control = boost_control(mstop = 3), :
     could not find function "glmboostLSS"
     Execution halted
    Running the tests in 'tests/regtest-stabilization.R' failed.
    Complete output:
     > ###
     > # test functionality of stabilization
     >
     > require("gamboostLSS")
     Loading required package: gamboostLSS
     Warning message:
     In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'gamboostLSS'
     >
     > ## simulate Gaussian data
     > set.seed(0804)
     > x1 <- runif(1000)
     > x2 <- runif(1000)
     > x3 <- runif(1000)
     > x4 <- runif(1000)
     > mu <- 1.5 +1 * x1 +4 * x2
     > sigma <- exp(1 - 0.2 * x3 -0.4 * x4)
     > y <- rnorm(mean = mu, sd = sigma, n = length(mu))
     > dat <- data.frame(x1, x2, x3, x4, y)
     >
     > ## do not use stabilization
     > m1 <- glmboostLSS(y ~ x1 + x2 + x3 + x4,
     + families=GaussianLSS(),
     + data=dat)
     Error in glmboostLSS(y ~ x1 + x2 + x3 + x4, families = GaussianLSS(), :
     could not find function "glmboostLSS"
     Execution halted
    Running the tests in 'tests/regtest-stabsel.R' failed.
    Complete output:
     > require("gamboostLSS")
     Loading required package: gamboostLSS
     Warning message:
     In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'gamboostLSS'
     > ### Data generating process:
     > set.seed(1907)
     > x1 <- rnorm(500)
     > x2 <- rnorm(500)
     > x3 <- rnorm(500)
     > x4 <- rnorm(500)
     > x5 <- rnorm(500)
     > x6 <- rnorm(500)
     > mu <- exp(1.5 +1 * x1 +0.5 * x2 -0.5 * x3 -1 * x4)
     > sigma <- exp(-0.4 * x3 -0.2 * x4 +0.2 * x5 +0.4 * x6)
     > y <- numeric(500)
     > for( i in 1:500)
     + y[i] <- rnbinom(1, size = sigma[i], mu = mu[i])
     > dat <- data.frame(x1, x2, x3, x4, x5, x6, y)
     >
     > model <- glmboostLSS(y ~ ., families = NBinomialLSS(), data = dat,
     + control = boost_control(mstop = 10),
     + center = TRUE, method = "cyclic")
     Error in glmboostLSS(y ~ ., families = NBinomialLSS(), data = dat, control = boost_control(mstop = 10), :
     could not find function "glmboostLSS"
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 2.0-5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'gamboostLSS_Tutorial.Rnw' using Sweave
    Warning in install.packages("gamboostLSS", repos = repos) :
     'lib = "D:/RCompile/recent/R-4.1.2/library"' is not writable
    
    Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics:
     chunk 1 (label = init)
    Error in install.packages("gamboostLSS", repos = repos) :
     unable to install packages
    
    --- failed re-building 'gamboostLSS_Tutorial.Rnw'
    
    SUMMARY: processing the following file failed:
     'gamboostLSS_Tutorial.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 2.0-5
Check: tests
Result: ERROR
     Running 'bugfixes.R' [7s]
     Running 'regtest-families.R' [15s]
     Running 'regtest-gamboostLSS.R' [11s]
     Running 'regtest-glmboostLSS.R' [10s]
     Running 'regtest-mstop.R' [6s]
     Running 'regtest-noncyclic_fitting.R' [14s]
     Running 'regtest-stabilization.R' [45s]
     Running 'regtest-stabsel.R' [0s]
    Running the tests in 'tests/regtest-stabsel.R' failed.
    Complete output:
     > require("gamboostLSS")
     Loading required package: gamboostLSS
     Warning message:
     In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'gamboostLSS'
     > ### Data generating process:
     > set.seed(1907)
     > x1 <- rnorm(500)
     > x2 <- rnorm(500)
     > x3 <- rnorm(500)
     > x4 <- rnorm(500)
     > x5 <- rnorm(500)
     > x6 <- rnorm(500)
     > mu <- exp(1.5 +1 * x1 +0.5 * x2 -0.5 * x3 -1 * x4)
     > sigma <- exp(-0.4 * x3 -0.2 * x4 +0.2 * x5 +0.4 * x6)
     > y <- numeric(500)
     > for( i in 1:500)
     + y[i] <- rnbinom(1, size = sigma[i], mu = mu[i])
     > dat <- data.frame(x1, x2, x3, x4, x5, x6, y)
     >
     > model <- glmboostLSS(y ~ ., families = NBinomialLSS(), data = dat,
     + control = boost_control(mstop = 10),
     + center = TRUE, method = "cyclic")
     Error in glmboostLSS(y ~ ., families = NBinomialLSS(), data = dat, control = boost_control(mstop = 10), :
     could not find function "glmboostLSS"
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2.0-5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'gamboostLSS_Tutorial.Rnw' using Sweave
    Warning in install.packages("gamboostLSS", repos = repos) :
     'lib = "D:/RCompile/recent/R-4.0.5/library"' is not writable
    
    Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics:
     chunk 1 (label = init)
    Error in install.packages("gamboostLSS", repos = repos) :
     unable to install packages
    
    --- failed re-building 'gamboostLSS_Tutorial.Rnw'
    
    SUMMARY: processing the following file failed:
     'gamboostLSS_Tutorial.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64