CRAN Package Check Results for Package emuR

Last updated on 2023-02-04 12:57:12 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3.0 25.87 340.51 366.38 NOTE
r-devel-linux-x86_64-debian-gcc 2.3.0 20.93 240.85 261.78 NOTE
r-devel-linux-x86_64-fedora-clang 2.3.0 402.10 NOTE
r-devel-linux-x86_64-fedora-gcc 2.3.0 389.64 NOTE
r-devel-windows-x86_64 2.3.0 236.00 462.00 698.00 ERROR
r-patched-linux-x86_64 2.3.0 31.81 303.07 334.88 OK
r-release-linux-x86_64 2.3.0 20.24 298.67 318.91 OK
r-release-macos-arm64 2.3.0 91.00 OK
r-release-macos-x86_64 2.3.0 206.00 OK
r-release-windows-x86_64 2.3.0 226.00 376.00 602.00 ERROR
r-oldrel-macos-arm64 2.3.0 103.00 OK
r-oldrel-macos-x86_64 2.3.0 159.00 OK
r-oldrel-windows-ix86+x86_64 2.3.0 45.00 347.00 392.00 ERROR

Check Details

Version: 2.3.0
Check: Rd files
Result: NOTE
    checkRd: (-1) cbind.trackdata.Rd:20: Escaped LaTeX specials: \$
    checkRd: (-1) cbind.trackdata.Rd:24: Escaped LaTeX specials: \$ \$
    checkRd: (-1) cbind.trackdata.Rd:14: Escaped LaTeX specials: \$ \$
    checkRd: (-1) cbind.trackdata.Rd:15: Escaped LaTeX specials: \$
    checkRd: (-1) cbind.trackdata.Rd:16: Escaped LaTeX specials: \$
    checkRd: (-1) crplot.Rd:72: Escaped LaTeX specials: \$ \$ \$
    checkRd: (-1) crplot.Rd:73: Escaped LaTeX specials: \$
    checkRd: (-1) crplot.Rd:74: Escaped LaTeX specials: \$
    checkRd: (-1) crplot.Rd:75: Escaped LaTeX specials: \$
    checkRd: (-1) crplot.Rd:86: Escaped LaTeX specials: \$ \$
    checkRd: (-1) dbtopower.Rd:29: Escaped LaTeX specials: \$
    checkRd: (-1) demo.all.f0.Rd:8: Escaped LaTeX specials: \$ \$ \$
    checkRd: (-1) demo.all.f0.Rd:10: Escaped LaTeX specials: \$
    checkRd: (-1) demo.all.fm.Rd:8: Escaped LaTeX specials: \$
    checkRd: (-1) demo.all.rms.Rd:8: Escaped LaTeX specials: \$ \$ \$
    checkRd: (-1) demo.all.rms.Rd:10: Escaped LaTeX specials: \$
    checkRd: (-1) demo.vowels.f0.Rd:7: Escaped LaTeX specials: \$ \$ \$
    checkRd: (-1) demo.vowels.f0.Rd:9: Escaped LaTeX specials: \$
    checkRd: (-1) demo.vowels.fm.Rd:7: Escaped LaTeX specials: \$
    checkRd: (-1) epgplot.Rd:27: Escaped LaTeX specials: \$
    checkRd: (-1) epgplot.Rd:56: Escaped LaTeX specials: \$
    checkRd: (-1) fapply.Rd:18: Escaped LaTeX specials: \$
    checkRd: (-1) fapply.Rd:39: Escaped LaTeX specials: \$
    checkRd: (-1) locus.Rd:38: Escaped LaTeX specials: \$
    checkRd: (-1) mu.colour.Rd:60: Escaped LaTeX specials: \$ \$ \$ \$
    checkRd: (-1) mu.colour.Rd:61: Escaped LaTeX specials: \$ \$
    checkRd: (-1) plot.spectral.Rd:52: Escaped LaTeX specials: \$
    checkRd: (-1) rbind.trackdata.Rd:20: Escaped LaTeX specials: \$
    checkRd: (-1) rbind.trackdata.Rd:25: Escaped LaTeX specials: \$ \$
    checkRd: (-1) rbind.trackdata.Rd:14: Escaped LaTeX specials: \$ \$
    checkRd: (-1) rbind.trackdata.Rd:15: Escaped LaTeX specials: \$
    checkRd: (-1) rbind.trackdata.Rd:16: Escaped LaTeX specials: \$
    checkRd: (-1) trackdata.Rd:11: Escaped LaTeX specials: \$
    checkRd: (-1) trackdata.Rd:12: Escaped LaTeX specials: \$
    checkRd: (-1) trackdata.Rd:13: Escaped LaTeX specials: \$
    checkRd: (-1) trackdata.Rd:14: Escaped LaTeX specials: \$
    checkRd: (-1) tracktimes.Rd:17: Escaped LaTeX specials: \$
    checkRd: (-1) trapply.Rd:32: Escaped LaTeX specials: \$
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 2.3.0
Check: tests
Result: ERROR
     Running 'testthat.R' [230s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > test_check("emuR")
     Loading required package: emuR
    
     Attaching package: 'emuR'
    
     The following object is masked from 'package:base':
    
     norm
    
     [1] "INFO: No bundleList dir found in emuDB (path: D:\\temp\\RtmpOix9hL\\emuR_testthat\\ae_emuDB/bundleLists)! Creating directory..."
     INFO: Rewriting 7 _annot.json files to file system...
    
     |
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     |======================================================================| 100%
     INFO: parsing 14 fms segments/events
    
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     INFO: parsing 14 fms segments/events
    
     |
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     |========== | 14%
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     |=============== | 21%
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     |==================== | 29%
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     Read 16 items
     Read 12 records
     Read 24 items
     Read 20 records
     [ FAIL 1 | WARN 233 | SKIP 37 | PASS 845 ]
    
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (6)
     • empty test (29)
     • skipping as it takes 4 ever to test -> make sure to rerun on deploy (2)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test_emuR-database.R:652'): rename emuDB works correctly ────────────
     <Rcpp::exception/C++Error/error/condition>
     Error: no such table: emu_db
     Backtrace:
     ▆
     1. └─emuR::rename_emuDB(path2db, "aeRename") at test_emuR-database.R:652:2
     2. ├─DBI::dbExecute(...)
     3. └─DBI::dbExecute(...)
     4. ├─DBI::dbSendStatement(conn, statement, ...)
     5. └─DBI::dbSendStatement(conn, statement, ...)
     6. ├─DBI::dbSendQuery(conn, statement, ...)
     7. └─RSQLite::dbSendQuery(conn, statement, ...)
     8. └─RSQLite (local) .local(conn, statement, ...)
     9. ├─methods::new(...)
     10. │ ├─methods::initialize(value, ...)
     11. │ └─methods::initialize(value, ...)
     12. └─RSQLite:::result_create(conn@ptr, statement)
    
     [ FAIL 1 | WARN 233 | SKIP 37 | PASS 845 ]
     Error: Test failures
     In addition: Warning message:
     call dbDisconnect() when finished working with a connection
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 2.3.0
Check: tests
Result: ERROR
     Running 'testthat.R' [192s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > test_check("emuR")
     Loading required package: emuR
    
     Attaching package: 'emuR'
    
     The following object is masked from 'package:base':
    
     norm
    
     [1] "INFO: No bundleList dir found in emuDB (path: D:\\temp\\RtmpSsYLbx\\emuR_testthat\\ae_emuDB/bundleLists)! Creating directory..."
     INFO: Rewriting 7 _annot.json files to file system...
    
     |
     | | 0%
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     |========== | 14%
     |
     |==================== | 29%
     |
     |============================== | 43%
     |
     |======================================== | 57%
     |
     |================================================== | 71%
     |
     |============================================================ | 86%
     |
     |======================================================================| 100%
     INFO: parsing 14 fms segments/events
    
     |
     | | 0%
     |
     |===== | 7%
     |
     |========== | 14%
     |
     |=============== | 21%
     |
     |==================== | 29%
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     |========================= | 36%
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     |============================== | 43%
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     |=================================== | 50%
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     |======================================== | 57%
     |
     |============================================= | 64%
     |
     |================================================== | 71%
     |
     |======================================================= | 79%
     |
     |============================================================ | 86%
     |
     |================================================================= | 93%
     |
     |======================================================================| 100%
    
     INFO: parsing 14 fms segments/events
    
     |
     | | 0%
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     |===== | 7%
     |
     |========== | 14%
     |
     |=============== | 21%
     |
     |==================== | 29%
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     |========================= | 36%
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     |============================== | 43%
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     |=================================== | 50%
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     |======================================== | 57%
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     |============================================= | 64%
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     |================================================== | 71%
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     |======================================================= | 79%
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     |============================================================ | 86%
     |
     |================================================================= | 93%
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     |======================================================================| 100%
     Read 16 items
     Read 12 records
     Read 24 items
     Read 20 records
     [ FAIL 1 | WARN 9 | SKIP 37 | PASS 845 ]
    
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (6)
     • empty test (29)
     • skipping as it takes 4 ever to test -> make sure to rerun on deploy (2)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test_emuR-database.R:652'): rename emuDB works correctly ────────────
     <Rcpp::exception/C++Error/error/condition>
     Error: no such table: emu_db
     Backtrace:
     ▆
     1. └─emuR::rename_emuDB(path2db, "aeRename") at test_emuR-database.R:652:2
     2. ├─DBI::dbExecute(...)
     3. └─DBI::dbExecute(...)
     4. ├─DBI::dbSendStatement(conn, statement, ...)
     5. └─DBI::dbSendStatement(conn, statement, ...)
     6. ├─DBI::dbSendQuery(conn, statement, ...)
     7. └─RSQLite::dbSendQuery(conn, statement, ...)
     8. └─RSQLite (local) .local(conn, statement, ...)
     9. ├─methods::new(...)
     10. │ ├─methods::initialize(value, ...)
     11. │ └─methods::initialize(value, ...)
     12. └─RSQLite:::result_create(conn@ptr, statement)
    
     [ FAIL 1 | WARN 9 | SKIP 37 | PASS 845 ]
     Error: Test failures
     In addition: Warning message:
     call dbDisconnect() when finished working with a connection
     Execution halted
Flavor: r-release-windows-x86_64

Version: 2.3.0
Check: tests
Result: ERROR
     Running 'testthat.R' [184s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > test_check("emuR")
     Loading required package: emuR
    
     Attaching package: 'emuR'
    
     The following object is masked from 'package:base':
    
     norm
    
     [1] "INFO: No bundleList dir found in emuDB (path: D:\\temp\\RtmpOqddSr\\emuR_testthat\\ae_emuDB/bundleLists)! Creating directory..."
     INFO: Rewriting 7 _annot.json files to file system...
    
     |
     | | 0%
     |
     |========== | 14%
     |
     |==================== | 29%
     |
     |============================== | 43%
     |
     |======================================== | 57%
     |
     |================================================== | 71%
     |
     |============================================================ | 86%
     |
     |======================================================================| 100%
     INFO: parsing 14 fms segments/events
    
     |
     | | 0%
     |
     |===== | 7%
     |
     |========== | 14%
     |
     |=============== | 21%
     |
     |==================== | 29%
     |
     |========================= | 36%
     |
     |============================== | 43%
     |
     |=================================== | 50%
     |
     |======================================== | 57%
     |
     |============================================= | 64%
     |
     |================================================== | 71%
     |
     |======================================================= | 79%
     |
     |============================================================ | 86%
     |
     |================================================================= | 93%
     |
     |======================================================================| 100%
    
     INFO: parsing 14 fms segments/events
    
     |
     | | 0%
     |
     |===== | 7%
     |
     |========== | 14%
     |
     |=============== | 21%
     |
     |==================== | 29%
     |
     |========================= | 36%
     |
     |============================== | 43%
     |
     |=================================== | 50%
     |
     |======================================== | 57%
     |
     |============================================= | 64%
     |
     |================================================== | 71%
     |
     |======================================================= | 79%
     |
     |============================================================ | 86%
     |
     |================================================================= | 93%
     |
     |======================================================================| 100%
     Read 16 items
     Read 12 records
     Read 24 items
     Read 20 records
     [ FAIL 1 | WARN 233 | SKIP 37 | PASS 845 ]
    
     == Skipped tests ===============================================================
     * On CRAN (6)
     * empty test (29)
     * skipping as it takes 4 ever to test -> make sure to rerun on deploy (2)
    
     == Failed tests ================================================================
     -- Error ('test_emuR-database.R:652'): rename emuDB works correctly ------------
     <Rcpp::exception/C++Error/error/condition>
     Error: no such table: emu_db
     Backtrace:
     x
     1. \-emuR::rename_emuDB(path2db, "aeRename") at test_emuR-database.R:652:2
     2. +-DBI::dbExecute(...)
     3. \-DBI::dbExecute(...)
     4. +-DBI::dbSendStatement(conn, statement, ...)
     5. \-DBI::dbSendStatement(conn, statement, ...)
     6. +-DBI::dbSendQuery(conn, statement, ...)
     7. \-RSQLite::dbSendQuery(conn, statement, ...)
     8. \-RSQLite (local) .local(conn, statement, ...)
     9. +-methods::new(...)
     10. | +-methods::initialize(value, ...)
     11. | \-methods::initialize(value, ...)
     12. \-RSQLite:::result_create(conn@ptr, statement)
    
     [ FAIL 1 | WARN 233 | SKIP 37 | PASS 845 ]
     Error: Test failures
     In addition: Warning message:
     call dbDisconnect() when finished working with a connection
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64