CRAN Package Check Results for Package data.table

Last updated on 2020-07-05 21:47:32 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.12.8 39.97 545.07 585.04 ERROR
r-devel-linux-x86_64-debian-gcc 1.12.8 30.73 766.54 797.27 ERROR
r-devel-linux-x86_64-fedora-clang 1.12.8 499.92 ERROR
r-devel-linux-x86_64-fedora-gcc 1.12.8 492.04 ERROR
r-devel-windows-ix86+x86_64 1.12.8 140.00 629.00 769.00 ERROR
r-patched-linux-x86_64 1.12.8 35.16 655.71 690.87 ERROR
r-patched-solaris-x86 1.12.8 443.30 ERROR
r-release-linux-x86_64 1.12.8 33.86 639.06 672.92 ERROR
r-release-osx-x86_64 1.12.8 ERROR
r-release-windows-ix86+x86_64 1.12.8 117.00 660.00 777.00 ERROR
r-oldrel-osx-x86_64 1.12.8 OK
r-oldrel-windows-ix86+x86_64 1.12.8 105.00 457.00 562.00 OK

Additional issues

clang-UBSAN

Check Details

Version: 1.12.8
Check: tests
Result: ERROR
     Running 'autoprint.R' [1s/1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [83s/34s]
     Running 'knitr.R' [1s/1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [320s/145s]
     Running 'nafill.R' [4s/3s]
     Running 'other.R' [0s/1s]
     Running 'types.R' [1s/1s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     S3 method lookup found 'as.Date.IDate' on search path
     S3 method lookup found 'as.Date.IDate' on search path
    
     10 longest running tests took 66s (46% of 142s)
     ID time nTest
     1: 1650 9.719 91
     2: 1648 9.251 91
     3: 1438 9.153 738
     4: 1652 7.863 91
     5: 1642 6.123 91
     6: 1888 5.922 9
     7: 1646 5.670 91
     8: 1848 4.601 1
     9: 1644 4.091 91
     10: 1912 4.019 2
    
     Error in test.data.table() :
     3 errors out of 8152 in 00:02:23 elapsed (00:04:59 cpu) on Thu Jul 2 23:00:45 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.iso885915;LC_NUMERIC=C;LC_TIME=en_US.iso885915;LC_COLLATE=C;LC_MONETARY=en_US.iso885915;LC_MESSAGES=en_US.iso885915;LC_PAPER=en_US.iso885915;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.iso885915;LC_IDENTIFICATION=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5.
     In addition: Warning messages:
     1: In parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) :
     invalid input found on input connection '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2'
     2: In parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) :
     invalid input found on input connection '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2'
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [43s/67s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [599s/584s]
     Running ‘nafill.R’ [3s/4s]
     Running ‘other.R’ [0s/1s]
     Running ‘types.R’ [1s/1s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 281s (48% of 582s)
     ID time nTest
     1: 1438 57.745 738
     2: 1648 43.293 91
     3: 1650 37.385 91
     4: 1652 27.173 91
     5: 1644 24.700 91
     6: 1642 24.317 91
     7: 1912 17.259 2
     8: 863 17.181 1
     9: 1252 16.370 484
     10: 1223 15.813 728
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:09:42 elapsed (00:09:53 cpu) on Sat Jul 4 20:50:14 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=C;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [60s/36s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [229s/148s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 24
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 24
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 59s (40% of 146s)
     ID time nTest
     1: 1438 8.549 738
     2: 1652 7.564 91
     3: 1650 6.791 91
     4: 1648 6.725 91
     5: 1888 6.264 9
     6: 1848 5.522 1
     7: 1912 4.841 2
     8: 1644 4.729 91
     9: 1642 4.519 91
     10: 1646 3.801 91
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:02:27 elapsed (00:03:38 cpu) on Sat Jul 4 10:38:31 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/London, locale='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [41s/53s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [245s/247s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 24
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 24
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 109s (44% of 246s)
     ID time nTest
     1: 1438 19.209 738
     2: 1652 14.235 91
     3: 1648 14.143 91
     4: 1650 13.329 91
     5: 1912 9.355 2
     6: 1642 8.779 91
     7: 1644 8.594 91
     8: 1646 8.281 91
     9: 1223 7.716 728
     10: 1888 6.195 9
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:04:06 elapsed (00:04:00 cpu) on Sun Jun 28 12:40:09 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/London, locale='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.12.8
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [29s]
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [162s]
     Running 'nafill.R' [2s]
     Running 'other.R' [1s]
     Running 'types.R' [1s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 32
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: D:/temp/RtmpMjyx6H/RLIBS_27f7c6c814816/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1590.04 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 2 3 4
     > y = INT(1, 4, 2, 3)
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     Mean relative difference: 0.4444444
     Test 1590.07 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     > y = INT(2, 3, 1, 4)
     First 4 of 4 (type 'integer'):
     [1] 2 3 1 4
     Mean relative difference: 0.4
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 43s (26% of 160s)
     ID time nTest
     1: 1739 5.26 5
     2: 1888 4.84 9
     3: 1835 4.83 1
     4: 1874 4.49 5
     5: 1848 4.24 1
     6: 1869 4.02 7
     7: 894 3.97 360
     8: 1449 3.96 2
     9: 901 3.88 2
     10: 1909 3.80 6
    
     Error in test.data.table() :
     7 errors out of 8276 in 00:02:40 elapsed (00:01:26 cpu) on Wed Jul 01 11:31:08 2020. [endian==little, sizeof(long double)==12, sizeof(pointer)==4, TZ=Europe/Berlin, locale='LC_COLLATE=C;LC_CTYPE=German_Germany.1252;LC_MONETARY=C;LC_NUMERIC=C;LC_TIME=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==32; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1590.04, 1590.07, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.12.8
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [31s]
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [200s]
     Running 'nafill.R' [2s]
     Running 'other.R' [1s]
     Running 'types.R' [1s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 32
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: D:/temp/RtmpMjyx6H/RLIBS_27f7c6c814816/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1590.04 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 2 3 4
     > y = INT(1, 4, 2, 3)
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     Mean relative difference: 0.4444444
     Test 1590.07 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     > y = INT(2, 3, 1, 4)
     First 4 of 4 (type 'integer'):
     [1] 2 3 1 4
     Mean relative difference: 0.4
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 55s (28% of 198s)
     ID time nTest
     1: 1438 8.76 738
     2: 1650 6.54 91
     3: 1652 6.40 91
     4: 1648 6.19 91
     5: 1888 5.68 9
     6: 1739 5.12 5
     7: 1835 4.79 1
     8: 1848 4.32 1
     9: 894 4.04 360
     10: 1874 3.98 5
    
     Error in test.data.table() :
     7 errors out of 9652 in 00:03:18 elapsed (00:02:02 cpu) on Wed Jul 01 11:35:08 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Berlin, locale='LC_COLLATE=C;LC_CTYPE=German_Germany.1252;LC_MONETARY=C;LC_NUMERIC=C;LC_TIME=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==32; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1590.04, 1590.07, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [53s/63s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [468s/371s]
     Running ‘nafill.R’ [2s/2s]
     Running ‘other.R’ [0s/1s]
     Running ‘types.R’ [1s/1s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 177s (48% of 369s)
     ID time nTest
     1: 1438 35.846 738
     2: 1648 25.026 91
     3: 1650 21.636 91
     4: 1652 20.677 91
     5: 1644 14.183 91
     6: 1642 13.223 91
     7: 1223 13.109 728
     8: 1912 12.825 2
     9: 1646 11.922 91
     10: 1639 9.111 143
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:06:10 elapsed (00:07:41 cpu) on Fri Jul 3 14:46:53 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=C;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [38s/48s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [60s/73s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 16
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 2
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: /home/ripley/R/Lib32/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1658.421 produced 1 errors but expected 0
     Expected:
     Observed: zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please include the full output above and below this message in your data.table bug report.
     Output captured before unexpected warning/error/message:
     omp_get_num_procs() 16
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 2
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     No list columns are present. Setting sep2='' otherwise quote='auto' would quote fields containing sep2.
     Column writers: 3 3
     args.doRowNames=0 args.rowNames=0 doQuote=-128 args.nrow=200 args.ncol=2 eolLen=1
     maxLineLen=51. Found in 0.000s
     Writing bom (false), yaml (0 characters) and column names (true) ... deflate input stream: d8bf760 39 baa3a18 4
     deflate returned 1 with stream->total_out==24; Z_FINISH==4, Z_OK==0, Z_STREAM_END==1
     done in 0.000s
     Writing 200 rows in 1 batches of 200 rows (each buffer size 8MB, showProgress=0, nth=1)
     deflate input stream: f7e21d0 8391193 efe21c8 800
     deflate returned -2 with stream->total_out==0; Z_FINISH==4, Z_OK==0, Z_STREAM_END==1
     <simpleError in fwrite(DT, file = f1 <- tempfile(fileext = ".gz"), verbose = TRUE): zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please include the full output above and below this message in your data.table bug report.>
     Test 1658.43 ran without errors but failed check that x equals y:
     > x = fread(f1)
     Empty data.table (0 rows and 2 cols): a,b
     [Key= Types=log,log Classes=log,log]
     > y = DT
     a b [Key= Types=int,int Classes=int,int]
     1: 1 1
     2: 1 1
     ---
     199: 2 4
     200: 2 4
     Different number of rows
     Error in fwrite(DT, file = f3 <- tempfile(), compress = "gzip") :
     zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please retry fwrite() with verbose=TRUE and include the full output with your data.table bug report.
     Error in test.data.table() :
     Failed after test 1658.43 before the next test() call in /home/ripley/R/Lib32/data.table/tests/tests.Rraw.bz2
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [54s/65s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [453s/368s]
     Running ‘nafill.R’ [2s/2s]
     Running ‘other.R’ [0s/1s]
     Running ‘types.R’ [1s/1s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 179s (48% of 366s)
     ID time nTest
     1: 1438 40.787 738
     2: 1648 21.348 91
     3: 1650 20.679 91
     4: 1652 19.783 91
     5: 1642 18.102 91
     6: 1644 17.541 91
     7: 1646 14.250 91
     8: 1912 10.767 2
     9: 1252 8.310 484
     10: 1639 7.732 143
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:06:07 elapsed (00:07:25 cpu) on Sat Jul 4 06:47:40 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=C;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-release-linux-x86_64

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [13s/20s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [71s/114s]
    Running the tests in ‘tests/main.R’ failed.
    Last 13 lines of output:
     ID time nTest
     1: 1874 11.042 5
     2: 1888 7.667 9
     3: 1438 5.275 738
     4: 1875 4.294 1
     5: 1648 4.181 91
     6: 1650 4.089 91
     7: 1848 3.928 1
     8: 1652 3.828 91
     9: 1642 2.857 91
     10: 1437 2.630 36
    
     Error in test.data.table() :
     5 errors out of 9661 in 00:01:53 elapsed (51.0s cpu) on Mon May 18 02:11:51 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=America/New_York, locale='C/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='This installation of data.table has not been compiled with OpenMP support.; omp_get_num_procs()==1; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==1; omp_get_max_threads()==1; OMP_THREAD_LIMIT==unset; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 1 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.12.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘datatable-benchmarking.Rmd’ using rmarkdown
    --- finished re-building ‘datatable-benchmarking.Rmd’
    
    --- re-building ‘datatable-faq.Rmd’ using rmarkdown
    --- finished re-building ‘datatable-faq.Rmd’
    
    Warning: namespace ‘knitr’ is not available and has been replaced
    by .GlobalEnv when processing object ‘<unknown>’
    Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
    Calls: <Anonymous> -> loadVignetteBuilder
    Execution halted
    Warning: namespace ‘knitr’ is not available and has been replaced
    by .GlobalEnv when processing object ‘<unknown>’
    Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
    Calls: <Anonymous> -> loadVignetteBuilder
    Execution halted
    Warning: namespace ‘knitr’ is not available and has been replaced
    by .GlobalEnv when processing object ‘<unknown>’
    Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
    Calls: <Anonymous> -> loadVignetteBuilder
    Execution halted
    --- re-building ‘datatable-reference-semantics.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-reference-semantics.Rmd’
    
    --- re-building ‘datatable-reshape.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-reshape.Rmd’
    
    --- re-building ‘datatable-sd-usage.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-sd-usage.Rmd’
    
    --- re-building ‘datatable-secondary-indices-and-auto-indexing.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-secondary-indices-and-auto-indexing.Rmd’
    
    rm -rf *.tex *.bbl *.blg *.aux *.out *.toc *.log *.spl *tikzDictionary *.md figure/
    rm -rf *.tex *.bbl *.blg *.aux *.out *.toc *.log *.spl *tikzDictionary *.md figure/
    SUMMARY: processing the following files failed:
     ‘datatable-importing.Rmd’ ‘datatable-intro.Rmd’
     ‘datatable-keys-fast-subset.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.12.8
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'autoprint.R' [0s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [21s]
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [219s]
     Running 'nafill.R' [1s]
     Running 'other.R' [0s]
     Running 'types.R' [0s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 32
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: D:/temp/RtmpIPTLuf/RLIBS_2b3bc1a0c48fe/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 79s (36% of 218s)
     ID time nTest
     1: 1449 9.29 2
     2: 900 8.95 2
     3: 1909 8.61 6
     4: 2028 8.51 2
     5: 1621 8.05 2
     6: 1555 8.02 13
     7: 1658 7.87 61
     8: 901 7.60 2
     9: 1869 7.58 7
     10: 1759 4.77 1
    
     Error in test.data.table() :
     5 errors out of 8276 in 00:03:38 elapsed (00:01:16 cpu) on Sun Jun 28 08:40:22 2020. [endian==little, sizeof(long double)==12, sizeof(pointer)==4, TZ=Europe/Berlin, locale='LC_COLLATE=C;LC_CTYPE=German_Germany.1252;LC_MONETARY=C;LC_NUMERIC=C;LC_TIME=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==32; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.12.8
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [24s]
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [246s]
     Running 'nafill.R' [1s]
     Running 'other.R' [1s]
     Running 'types.R' [0s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 32
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: D:/temp/RtmpIPTLuf/RLIBS_2b3bc1a0c48fe/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 71s (29% of 245s)
     ID time nTest
     1: 2028 7.74 2
     2: 900 7.42 2
     3: 1869 7.41 7
     4: 1621 7.35 2
     5: 1658 7.19 61
     6: 1449 7.07 2
     7: 901 7.05 2
     8: 1555 6.97 13
     9: 1438 6.82 738
     10: 1909 6.73 6
    
     Error in test.data.table() :
     5 errors out of 9652 in 00:04:05 elapsed (00:01:41 cpu) on Sun Jun 28 08:44:57 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Berlin, locale='LC_COLLATE=C;LC_CTYPE=German_Germany.1252;LC_MONETARY=C;LC_NUMERIC=C;LC_TIME=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==32; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-release-windows-ix86+x86_64