CRAN Package Check Results for Package bPeaks

Last updated on 2021-09-21 08:49:32 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 2.80 35.86 38.66 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 2.10 28.72 30.82 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 54.01 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 43.90 NOTE
r-devel-windows-x86_64 1.2 4.00 40.00 44.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 1.2 ERROR
r-patched-linux-x86_64 1.2 2.73 35.30 38.03 NOTE
r-patched-solaris-x86 1.2 78.40 NOTE
r-release-linux-x86_64 1.2 2.67 34.84 37.51 NOTE
r-release-macos-arm64 1.2 NOTE
r-release-macos-x86_64 1.2 NOTE
r-release-windows-ix86+x86_64 1.2 5.00 50.00 55.00 NOTE
r-oldrel-macos-x86_64 1.2 NOTE
r-oldrel-windows-ix86+x86_64 1.2 4.00 47.00 51.00 NOTE

Check Details

Version: 1.2
Check: R code for possible problems
Result: NOTE
    bPeaksAnalysis: no visible global function definition for 'write.table'
    dataReading: no visible global function definition for 'read.table'
    dataSmoothing: no visible global function definition for 'filter'
    peakDetection: no visible global function definition for 'quantile'
    peakDetection: no visible global function definition for 'pdf'
    peakDetection: no visible global function definition for 'par'
    peakDetection: no visible global function definition for 'text'
    peakDetection: no visible global function definition for 'abline'
    peakDetection: no visible global function definition for 'points'
    peakDetection: no visible global function definition for 'dev.off'
    peakDetection: no visible global function definition for 'write.table'
    peakDrawing: no visible global function definition for 'par'
    peakDrawing: no visible global function definition for 'abline'
    peakLocation: no visible global function definition for 'read.table'
    peakLocation: no visible global function definition for 'pdf'
    peakLocation: no visible global function definition for 'barplot'
    peakLocation: no visible global function definition for 'dev.off'
    peakLocation: no visible global function definition for 'write.table'
    Undefined global functions or variables:
     abline barplot dev.off filter par pdf points quantile read.table text
     write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf")
     importFrom("graphics", "abline", "barplot", "par", "points", "text")
     importFrom("stats", "filter", "quantile")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'bPeaks_example-chrIV.bed' 'bPeaks_example-chrIV_bPeaksDrawing.pdf'
     'bPeaks_example-chrIV_dataSummary.pdf'
     'bPeaks_example_bPeaks_allGenome.bed'
     'bPeaks_example_bPeaks_parameterSummary.txt'
     'bPeaks_example_chrIV.bed' 'bPeaks_example_chrIV_bPeaksDrawing.pdf'
     'bPeaks_example_chrIV_dataSummary.pdf'
     'bPeaks_example_peakLocation.pdf'
     'bPeaks_example_peakLocation_inCDS.txt'
     'bPeaks_example_peakLocation_inPromoters.txt' 'peakStats.Robject'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     WARNING: installation-time patches will not be applied, could not get the patches index
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.2
Check: PDF version of manual
Result: WARN
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.2
Check: PDF version of manual without hyperrefs or index
Result: ERROR
    Re-running with no redirection of stdout/stderr.
Flavor: r-devel-windows-x86_64-gcc10-UCRT