CRAN Package Check Results for Package ape

Last updated on 2021-11-27 07:49:42 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.5 OK
r-devel-linux-x86_64-debian-gcc 5.5 45.20 185.01 230.21 OK
r-devel-linux-x86_64-fedora-clang 5.5 437.77 WARN
r-devel-linux-x86_64-fedora-gcc 5.5 415.68 WARN
r-devel-windows-x86_64-new-UL 5.5 125.00 412.00 537.00 OK
r-devel-windows-x86_64-new-TK 5.5 NOTE
r-devel-windows-x86_64-old 5.5 67.00 223.00 290.00 OK
r-patched-linux-x86_64 5.5 61.09 243.01 304.10 OK
r-patched-solaris-x86 5.5 456.90 OK
r-release-linux-x86_64 5.5 OK
r-release-macos-arm64 5.5 NOTE
r-release-macos-x86_64 5.5 OK
r-release-windows-ix86+x86_64 5.5 151.00 372.00 523.00 NOTE
r-oldrel-macos-x86_64 5.5 OK
r-oldrel-windows-ix86+x86_64 5.5 108.00 372.00 480.00 NOTE

Check Details

Version: 5.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘DrawingPhylogenies.Rnw’ using Sweave
    Error: processing vignette 'DrawingPhylogenies.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'DrawingPhylogenies.tex' failed.
    LaTeX errors:
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documenta
    --- failed re-building ‘DrawingPhylogenies.Rnw’
    
    --- re-building ‘MoranI.Rnw’ using Sweave
    Error: processing vignette 'MoranI.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'MoranI.tex' failed.
    LaTeX errors:
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    --- failed re-building ‘MoranI.Rnw’
    
    --- re-building ‘RandomTopologies.Rnw’ using Sweave
    Error: processing vignette 'RandomTopologies.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'RandomTopologies.tex' failed.
    LaTeX errors:
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    ! Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    --- failed re-building ‘RandomTopologies.Rnw’
    
    SUMMARY: processing the following files failed:
     ‘DrawingPhylogenies.Rnw’ ‘MoranI.Rnw’ ‘RandomTopologies.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 5.5
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
    --- re-building 'DrawingPhylogenies.Rnw' using Sweave
    Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
     running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "DrawingPhylogenies.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
    Error: processing vignette 'DrawingPhylogenies.Rnw' failed with diagnostics:
    running 'texi2dvi' on 'DrawingPhylogenies.tex' failed
    
    LaTeX errors:
    genies.tex:14: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:60: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:70: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:85: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:141: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:153: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:175: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:254: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:261: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:280: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:303: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:317: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:325: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:332: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:356: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:423: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:434: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:440: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:456: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:468: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:486: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:514: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:520: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:566: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:585: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:605: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:622: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:632: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:642: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:664: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:695: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:718: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:739: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:764: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:772: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:831: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:841: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:850: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    genies.tex:868: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for im
    --- failed re-building 'DrawingPhylogenies.Rnw'
    
    --- re-building 'MoranI.Rnw' using Sweave
    Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
     running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "MoranI.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
    --- finished re-building 'MoranI.Rnw'
    
    --- re-building 'RandomTopologies.Rnw' using Sweave
    Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
     running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "RandomTopologies.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
    Error: processing vignette 'RandomTopologies.Rnw' failed with diagnostics:
    running 'texi2dvi' on 'RandomTopologies.tex' failed
    
    LaTeX errors:
    gies.tex:13: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:48: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:74: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:87: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:104: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:122: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:151: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:162: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:174: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:193: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:204: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:232: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:249: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:261: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:280: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:294: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:302: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:374: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:413: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:421: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:433: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:495: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:508: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:527: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:559: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:621: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:632: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:640: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:689: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:700: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:712: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:729: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:759: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:792: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:799: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:864: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    gies.tex:873: Package xcolor Error: Undefined color `darkblue'.
    
    See the xcolor package documentation for explanation.
    Type H <return> for immediate help.
     ...
    
    --- failed re-building 'RandomTopologies.Rnw'
    
    SUMMARY: processing the following files failed:
     'DrawingPhylogenies.Rnw' 'RandomTopologies.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-new-TK

Version: 5.5
Check: installed package size
Result: NOTE
     installed size is 5.2Mb
     sub-directories of 1Mb or more:
     R 1.0Mb
     doc 1.3Mb
     libs 1.9Mb
Flavors: r-release-macos-arm64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64