Last updated on 2024-10-08 20:50:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.2 | 13.57 | 237.90 | 251.47 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.2 | 8.72 | 160.48 | 169.20 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.2 | 404.48 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.2 | 396.07 | OK | |||
| r-devel-windows-x86_64 | 2.0.2 | 13.00 | 244.00 | 257.00 | OK | |
| r-patched-linux-x86_64 | 2.0.2 | 16.82 | 109.99 | 126.81 | ERROR | |
| r-release-linux-x86_64 | 2.0.2 | 11.98 | 110.00 | 121.98 | ERROR | |
| r-release-macos-arm64 | 2.0.2 | 105.00 | NOTE | |||
| r-release-macos-x86_64 | 2.0.2 | 176.00 | OK | |||
| r-release-windows-x86_64 | 2.0.2 | 15.00 | 236.00 | 251.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.2 | 136.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.0.2 | 355.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.0.2 | 19.00 | 325.00 | 344.00 | OK |
Version: 2.0.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘org.Hs.eg.db’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # nolint start
> library(testthat)
> library(SCpubr)
── SCpubr 2.0.2 ────────────────────────────────────────────────────────────────
ℹ Have a look at extensive tutorials in SCpubr's book.
✔ If you use SCpubr in your research, please cite it accordingly.
★ If the package is useful to you, consider leaving a Star in the GitHub repository.
! Keep track of the package updates on Twitter (@Enblacar) or in the Official NEWS website.
♥ Happy plotting!
── Tips! ──
ℹ To remove the white and black end from continuous palettes, use: options("SCpubr.ColorPaletteEnds" = FALSE)
✖ To suppress this startup message, use: suppressPackageStartupMessages(library(SCpubr))
✖ Alternatively, you can also set the following option: options("SCpubr.verbose" = FALSE)
And then load the package normally (and faster) as: library(SCpubr)
────────────────────────────────────────────────────────────────────────────────
> # nolint end
> test_check("SCpubr")
Error in `FUN()`:
! In path: "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/SCpubr.Rcheck/tests/testthat/setup.R"
Caused by error in `dbFileConnect()`:
! DB file '' not found
Backtrace:
▆
1. ├─testthat::test_check("SCpubr")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─AnnotationDbi::loadDb(...) at tests/testthat/setup.R:72:5
15. │ └─AnnotationDbi::dbFileConnect(file)
16. │ └─base::stop("DB file '", dbfile, "' not found")
17. └─base::.handleSimpleError(`<fn>`, "DB file '' not found", base::quote(dbFileConnect(file)))
18. └─testthat (local) h(simpleError(msg, call))
19. └─rlang::abort(...)
Execution halted
Flavor: r-patched-linux-x86_64
Version: 2.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/33s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # nolint start
> library(testthat)
> library(SCpubr)
── SCpubr 2.0.2 ────────────────────────────────────────────────────────────────
ℹ Have a look at extensive tutorials in SCpubr's book.
✔ If you use SCpubr in your research, please cite it accordingly.
★ If the package is useful to you, consider leaving a Star in the GitHub repository.
! Keep track of the package updates on Twitter (@Enblacar) or in the Official NEWS website.
♥ Happy plotting!
── Tips! ──
ℹ To remove the white and black end from continuous palettes, use: options("SCpubr.ColorPaletteEnds" = FALSE)
✖ To suppress this startup message, use: suppressPackageStartupMessages(library(SCpubr))
✖ Alternatively, you can also set the following option: options("SCpubr.verbose" = FALSE)
And then load the package normally (and faster) as: library(SCpubr)
────────────────────────────────────────────────────────────────────────────────
> # nolint end
> test_check("SCpubr")
Error in `FUN()`:
! In path: "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/SCpubr.Rcheck/tests/testthat/setup.R"
Caused by error in `dbFileConnect()`:
! DB file '' not found
Backtrace:
▆
1. ├─testthat::test_check("SCpubr")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─AnnotationDbi::loadDb(...) at tests/testthat/setup.R:72:5
15. │ └─AnnotationDbi::dbFileConnect(file)
16. │ └─base::stop("DB file '", dbfile, "' not found")
17. └─base::.handleSimpleError(`<fn>`, "DB file '' not found", base::quote(dbFileConnect(file)))
18. └─testthat (local) h(simpleError(msg, call))
19. └─rlang::abort(...)
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.0.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'AUCell', 'infercnv', 'Nebulosa'
Flavor: r-release-macos-arm64
Version: 2.0.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘infercnv’
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.0.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'AUCell', 'decoupleR', 'infercnv', 'Nebulosa'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64