CRAN Package Check Results for Package NFP

Last updated on 2019-08-21 10:47:32 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.99.2 40.52 232.74 273.26 NOTE
r-devel-linux-x86_64-debian-gcc 0.99.2 36.08 190.15 226.23 NOTE
r-devel-linux-x86_64-fedora-clang 0.99.2 258.23 WARN
r-devel-linux-x86_64-fedora-gcc 0.99.2 251.81 WARN
r-devel-windows-ix86+x86_64 0.99.2 78.00 320.00 398.00 NOTE
r-patched-linux-x86_64 0.99.2 40.69 224.49 265.18 NOTE
r-patched-solaris-x86 0.99.2 638.80 WARN
r-release-linux-x86_64 0.99.2 40.05 225.72 265.77 NOTE
r-release-windows-ix86+x86_64 0.99.2 55.00 246.00 301.00 NOTE
r-release-osx-x86_64 0.99.2 ERROR
r-oldrel-windows-ix86+x86_64 0.99.2 64.00 321.00 385.00 NOTE
r-oldrel-osx-x86_64 0.99.2 WARN

Check Details

Version: 0.99.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'NFPdata'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.99.2
Check: installed package size
Result: NOTE
     installed size is 8.0Mb
     sub-directories of 1Mb or more:
     data 7.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.99.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘NFP.Rnw’ using knitr
    Loading required package: graph
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which, which.max, which.min
    
    Loading required package: graphite
    Error: processing vignette 'NFP.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'NFP.tex' failed.
    LaTeX errors:
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Argument of \Hy@scantitle has an extra }.
    <inserted text>
     \par
    l.166 \renewcommand{\title}
     [1]{\def\@bioctitle{#1}\@oldtitle{#1}}
    ! Paragraph ended before \Hy@scantitle was complete.
    <to be read again>
     \par
    l.166 \renewcommand{\title}
     [1]{\def\@bioctitle{#1}\@oldtitle{#1}}
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Illegal parameter number in definition of \@.
    <to be read again>
     1
    l.166 \renewcommand{\title}[1]{\def\@bioctitle{#1
     }\@oldtitle{#1}}
    ! Use of \@ doesn't match its definition.
    l.166 ...command{\title}[1]{\def\@bioctitle{#1}\@o
     ldtitle{#1}}
    If you say, e.g., `\def\a1{...}', then you must always
    put `1' after `\a', since control sequence names are
    ! You can't use `macro parameter character #' in horizontal mode.
    l.166 ...title}[1]{\def\@bioctitle{#1}\@oldtitle{#
     1}}
    Sorry, but I'm not programmed to handle this case;
    I'll just pretend that you didn't ask for it.
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Argument of \etb@resrvda has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \etb@resrvda was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Undefined control sequence.
    \\etb@patchcmd ...etb@resrvda \let #2\etb@resrvda
     \undef \etb@resrvda \@firs...
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Argument of \@firstoftwo has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \@firstoftwo was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Argument of \@secondoftwo has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \@secondoftwo was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.94 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.94 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.94 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.94 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.94 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.106 ....941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.106 ....941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.106 ....941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.106 ....941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.106 ....941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
    
    --- failed re-building ‘NFP.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘NFP.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.99.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NFP.Rnw’ using knitr
    Loading required package: graph
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which, which.max, which.min
    
    Loading required package: graphite
    Error: processing vignette 'NFP.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'NFP.tex' failed.
    LaTeX errors:
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Argument of \Hy@scantitle has an extra }.
    <inserted text>
     \par
    l.166 \renewcommand{\title}
     [1]{\def\@bioctitle{#1}\@oldtitle{#1}}
    ! Paragraph ended before \Hy@scantitle was complete.
    <to be read again>
     \par
    l.166 \renewcommand{\title}
     [1]{\def\@bioctitle{#1}\@oldtitle{#1}}
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Illegal parameter number in definition of \@.
    <to be read again>
     1
    l.166 \renewcommand{\title}[1]{\def\@bioctitle{#1
     }\@oldtitle{#1}}
    ! Use of \@ doesn't match its definition.
    l.166 ...command{\title}[1]{\def\@bioctitle{#1}\@o
     ldtitle{#1}}
    If you say, e.g., `\def\a1{...}', then you must always
    put `1' after `\a', since control sequence names are
    ! You can't use `macro parameter character #' in horizontal mode.
    l.166 ...title}[1]{\def\@bioctitle{#1}\@oldtitle{#
     1}}
    Sorry, but I'm not programmed to handle this case;
    I'll just pretend that you didn't ask for it.
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Argument of \etb@resrvda has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \etb@resrvda was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Undefined control sequence.
    \\etb@patchcmd ...etb@resrvda \let #2\etb@resrvda
     \undef \etb@resrvda \@firs...
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Argument of \@firstoftwo has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \@firstoftwo was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Argument of \@secondoftwo has an extra }.
    <inserted text>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Paragraph ended before \@secondoftwo was complete.
    <to be read again>
     \par
    l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
     {}{}
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.94 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.94 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.94 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.94 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.94 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.100 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.106 ....941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.106 ....941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.106 ....941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.106 ....941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Undefined control sequence.
    <argument> ... \hsize -\width \@totalleftmargin\z
     @ \linewidth \hsize \advan...
    l.106 ....941, 0.941}\color{fgcolor}\begin{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Illegal unit of measure (pt inserted).
    <to be read again>
     \@
    l.113 \end{kframe}
    
    ! Missing number, treated as zero.
    <to be read again>
    
    --- failed re-building ‘NFP.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘NFP.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.99.2
Check: package dependencies
Result: ERROR
    Packages required but not available: 'graph', 'KEGGgraph'
    
    Packages suggested but not available for checking:
     'BiocStyle', 'graphite', 'NFPdata'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 0.99.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘BiocStyle’ ‘graphite’ ‘NFPdata’
Flavor: r-oldrel-osx-x86_64

Version: 0.99.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 10-11 (NFP.Rnw)
    Error: processing vignette 'NFP.Rnw' failed with diagnostics:
    there is no package called 'BiocStyle'
    Execution halted
Flavor: r-oldrel-osx-x86_64