CRAN Package Check Results for Package GSA

Last updated on 2021-11-28 19:48:53 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.03.1 NOTE
r-devel-linux-x86_64-debian-gcc 1.03.1 2.53 23.46 25.99 NOTE
r-devel-linux-x86_64-fedora-clang 1.03.1 52.56 NOTE
r-devel-linux-x86_64-fedora-gcc 1.03.1 40.25 NOTE
r-devel-windows-x86_64-new-UL 1.03.1 7.00 65.00 72.00 NOTE
r-devel-windows-x86_64-new-TK 1.03.1 NOTE
r-devel-windows-x86_64-old 1.03.1 5.00 47.00 52.00 NOTE
r-patched-linux-x86_64 1.03.1 3.10 28.84 31.94 NOTE
r-patched-solaris-x86 1.03.1 60.00 NOTE
r-release-linux-x86_64 1.03.1 3.63 28.90 32.53 NOTE
r-release-macos-arm64 1.03.1 NOTE
r-release-macos-x86_64 1.03.1 NOTE
r-release-windows-ix86+x86_64 1.03.1 6.00 45.00 51.00 NOTE
r-oldrel-macos-x86_64 1.03.1 NOTE
r-oldrel-windows-ix86+x86_64 1.03.1 5.00 43.00 48.00 NOTE

Check Details

Version: 1.03.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'impute' in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.03.1
Check: R code for possible problems
Result: NOTE
    GSA: no visible global function definition for 'impute.knn'
    Undefined global functions or variables:
     impute.knn
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.03.1
Check: Rd line widths
Result: NOTE
    Rd file 'GSA.Rd':
     \usage lines wider than 90 characters:
     method=c("maxmean","mean","absmean"), resp.type=c("Quantitative","Two class unpaired","Survival","Multiclass", "Two class paired", "tCo ... [TRUNCATED]
     \examples lines wider than 100 characters:
     GSA.obj<-GSA(x,y, genenames=genenames, genesets=genesets, resp.type="Two class unpaired", nperms=100)
     # GSA.obj<-GSA(x,y, genenames=genenames, genesets=geneset.obj$genesets, resp.type="Two class unpaired", nperms=100)
    
    Rd file 'GSA.func.Rd':
     \usage lines wider than 90 characters:
     s0 = NULL, s0.perc = NULL, minsize = 15, maxsize= 500, restand = TRUE, restand.basis=c("catalog","data"))
     \examples lines wider than 100 characters:
     # GSA.func.obj<-GSA.func(x,y, genenames=genenames, genesets=geneset.obj$genesets, resp.type="Two class unpaired")
    
    Rd file 'GSA.genescores.Rd':
     \examples lines wider than 100 characters:
     GSA.obj<-GSA(x,y, genenames=genenames, genesets=genesets, resp.type="Two class unpaired", nperms=100)
    
    Rd file 'GSA.listsets.Rd':
     \examples lines wider than 100 characters:
     GSA.obj<-GSA(x,y, genenames=genenames, genesets=genesets, resp.type="Two class unpaired", nperms=100)
    
    Rd file 'GSA.plot.Rd':
     \examples lines wider than 100 characters:
     GSA.obj<-GSA(x,y, genenames=genenames, genesets=genesets, resp.type="Two class unpaired", nperms=100)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64