CRAN Package Check Results for Package GExMap

Last updated on 2022-01-20 19:50:55 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.3 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.3 9.62 68.05 77.67 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.3 118.09 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.3 107.16 NOTE
r-devel-windows-x86_64-new-UL 1.1.3 20.00 103.00 123.00 NOTE
r-devel-windows-x86_64-new-TK 1.1.3 NOTE
r-patched-linux-x86_64 1.1.3 7.63 84.30 91.93 NOTE
r-release-linux-x86_64 1.1.3 8.70 85.59 94.29 NOTE
r-release-macos-arm64 1.1.3 NOTE
r-release-macos-x86_64 1.1.3 NOTE
r-release-windows-ix86+x86_64 1.1.3 22.00 101.00 123.00 NOTE
r-oldrel-macos-x86_64 1.1.3 NOTE
r-oldrel-windows-ix86+x86_64 1.1.3 19.00 99.00 118.00 NOTE

Check Details

Version: 1.1.3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'multtest' which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.3
Check: R code for possible problems
Result: NOTE
    gexmap : gextest: no visible global function definition for
     'wilcox.test'
    gexmap : gextest: no visible global function definition for
     'chisq.test'
    gexmap : gextest: no visible global function definition for
     'binom.test'
    gexmap : gextest: no visible global function definition for 'pdf'
    gexmap : gextest: no visible global function definition for 'matplot'
    gexmap : gextest: no visible global function definition for 'legend'
    gexmap : gextest: no visible global function definition for 'dev.off'
    gexmap : gextest: no visible global function definition for
     'write.table'
    gexmap : gexgraph: no visible global function definition for 'pdf'
    gexmap : gexgraph: no visible global function definition for 'matplot'
    gexmap : gexgraph: no visible global function definition for 'title'
    gexmap : gexgraph: no visible global function definition for 'axis'
    gexmap : gexgraph: no visible global function definition for 'rect'
    gexmap : gexgraph: no visible global function definition for 'text'
    gexmap : gexgraph: no visible global function definition for 'legend'
    gexmap : gexgraph: no visible global function definition for 'dev.off'
    gexmap : gexgo: no visible global function definition for 'write.table'
    gexmap : gexgo: no visible global function definition for 'pdf'
    gexmap : gexgo: no visible global function definition for 'pie'
    gexmap : gexgo: no visible global function definition for 'palette'
    gexmap : gexgo: no visible global function definition for 'rainbow'
    gexmap : gexgo: no visible global function definition for 'text'
    gexmap : gexgo: no visible global function definition for 'dev.off'
    gexmap: no visible global function definition for 'flush.console'
    gexmap: no visible global function definition for 'read.table'
    gexmap: no visible global function definition for 'write.table'
    Undefined global functions or variables:
     axis binom.test chisq.test dev.off flush.console legend matplot
     palette pdf pie rainbow read.table rect text title wilcox.test
     write.table
    Consider adding
     importFrom("grDevices", "dev.off", "palette", "pdf", "rainbow")
     importFrom("graphics", "axis", "legend", "matplot", "pie", "rect",
     "text", "title")
     importFrom("stats", "binom.test", "chisq.test", "wilcox.test")
     importFrom("utils", "flush.console", "read.table", "write.table")
    to your NAMESPACE file.
    
    Found the following calls to data() loading into the global environment:
    File 'GExMap/R/gexmap.R':
     data(list)
     data(data)
     data(corr)
    See section 'Good practice' in '?data'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.3
Check: Rd line widths
Result: NOTE
    Rd file 'gexmap.Rd':
     \usage lines wider than 90 characters:
     gexmap(genome = "homosapiens", scale = "", source = "", res = "", isGO = FALSE, isMAP = TRUE, lim_chi = 5, global_test_choice = 4, pcor ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.3
Check: R code for possible problems
Result: NOTE
    gexmap : gextest: no visible global function definition for
     ‘wilcox.test’
    gexmap : gextest: no visible global function definition for
     ‘chisq.test’
    gexmap : gextest: no visible global function definition for
     ‘binom.test’
    gexmap : gextest: no visible global function definition for ‘pdf’
    gexmap : gextest: no visible global function definition for ‘matplot’
    gexmap : gextest: no visible global function definition for ‘legend’
    gexmap : gextest: no visible global function definition for ‘dev.off’
    gexmap : gextest: no visible global function definition for
     ‘write.table’
    gexmap : gexgraph: no visible global function definition for ‘pdf’
    gexmap : gexgraph: no visible global function definition for ‘matplot’
    gexmap : gexgraph: no visible global function definition for ‘title’
    gexmap : gexgraph: no visible global function definition for ‘axis’
    gexmap : gexgraph: no visible global function definition for ‘rect’
    gexmap : gexgraph: no visible global function definition for ‘text’
    gexmap : gexgraph: no visible global function definition for ‘legend’
    gexmap : gexgraph: no visible global function definition for ‘dev.off’
    gexmap : gexgo: no visible global function definition for ‘write.table’
    gexmap : gexgo: no visible global function definition for ‘pdf’
    gexmap : gexgo: no visible global function definition for ‘pie’
    gexmap : gexgo: no visible global function definition for ‘palette’
    gexmap : gexgo: no visible global function definition for ‘rainbow’
    gexmap : gexgo: no visible global function definition for ‘text’
    gexmap : gexgo: no visible global function definition for ‘dev.off’
    gexmap: no visible global function definition for ‘flush.console’
    gexmap: no visible global function definition for ‘read.table’
    gexmap: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     axis binom.test chisq.test dev.off flush.console legend matplot
     palette pdf pie rainbow read.table rect text title wilcox.test
     write.table
    Consider adding
     importFrom("grDevices", "dev.off", "palette", "pdf", "rainbow")
     importFrom("graphics", "axis", "legend", "matplot", "pie", "rect",
     "text", "title")
     importFrom("stats", "binom.test", "chisq.test", "wilcox.test")
     importFrom("utils", "flush.console", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64