CRAN Package Check Results for Package FRK

Last updated on 2020-01-25 08:49:55 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.2 40.86 549.49 590.35 NOTE
r-devel-linux-x86_64-debian-gcc 0.2.2 28.51 421.38 449.89 NOTE
r-devel-linux-x86_64-fedora-clang 0.2.2 726.49 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.2 764.29 NOTE
r-devel-windows-ix86+x86_64 0.2.2 98.00 533.00 631.00 NOTE --no-vignettes
r-devel-windows-ix86+x86_64-gcc8 0.2.2 107.00 537.00 644.00 ERROR --no-vignettes
r-patched-linux-x86_64 0.2.2 34.72 522.61 557.33 NOTE
r-patched-solaris-x86 0.2.2 1154.00 NOTE
r-release-linux-x86_64 0.2.2 32.28 515.57 547.85 NOTE
r-release-windows-ix86+x86_64 0.2.2 63.00 524.00 587.00 NOTE --no-vignettes
r-release-osx-x86_64 0.2.2 NOTE
r-oldrel-windows-ix86+x86_64 0.2.2 50.00 522.00 572.00 NOTE --no-vignettes
r-oldrel-osx-x86_64 0.2.2 NOTE

Check Details

Version: 0.2.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'dggrids', 'INLA'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64

Version: 0.2.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘dggrids’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.2
Check: installed package size
Result: NOTE
     installed size is 8.2Mb
     sub-directories of 1Mb or more:
     data 4.8Mb
     doc 2.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.2
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'dggrids'
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.2
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 9.1Mb
     sub-directories of 1Mb or more:
     data 4.8Mb
     doc 2.1Mb
     libs 1.4Mb
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.2
Flags: --no-vignettes
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [88s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > ops <- options("crayon.enabled" = FALSE)
     > library(testthat)
     > require("covr")
     Loading required package: covr
     >
     > test_check("FRK")
     Loading required package: FRK
     Binned data in 0.03 seconds
     Binned data in 0 seconds
     -- 1. Error: plane_BAUs (@test_BAUs.R#36) -------------------------------------
     INLA installation error; no such file
     Backtrace:
     1. FRK::auto_BAUs(...)
     3. FRK:::auto_BAU(...)
     4. FRK:::.find_hull(coords, nonconvex_hull = nonconvex_hull, convex = convex)
     5. INLA::inla.nonconvex.hull(coords, convex = convex)
     6. INLA::inla.contour.segment(...)
     7. INLA::inla.mesh.create(...)
     10. INLA::inla.getOption("fmesher.arg")
     11. INLA:::inla.call.builtin()
    
     -- 2. Error: SpaceTime_BAUs (@test_BAUs.R#142) --------------------------------
     INLA installation error; no such file
     Backtrace:
     1. FRK::auto_BAUs(...)
     3. FRK:::auto_BAU(...)
     5. FRK:::auto_BAU(...)
     6. FRK:::.find_hull(coords, nonconvex_hull = nonconvex_hull, convex = convex)
     7. INLA::inla.nonconvex.hull(coords, convex = convex)
     8. INLA::inla.contour.segment(...)
     9. INLA::inla.mesh.create(...)
     12. INLA::inla.getOption("fmesher.arg")
     13. INLA:::inla.call.builtin()
    
     Normalising basis function evaluations at BAU level ...
     Binning data ...
     Binned data in 0.03 seconds
    
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     Maximum EM iterations reached
     Intercept
     0.1860381
     Formula: z ~ 1
     Number of datasets: 1
     Number of basis functions: 18
     Class of basis functions: Basis
     Number of BAUs [extract using object@BAUs]: 134
     Number of observations [extract using object@Z]: 50
     Mean obs. variance at BAU level [extract using object@Ve]: 0.01
     Fine-scale variance proportionality constant [extract using object@sigma2fshat]: 0.1211177
     Dimensions of C in Z = C*Y + e [extract using object@Cmat]: c(50L, 134L)
     Dimensions of S in Y = X*alpha + S*eta + delta [extract using object@S]: c(50L, 18L)
     Number of covariates: 1
    
     Formula: z ~ 1
     Number of datasets: 1
     Number of basis functions: 18
     Class of basis functions: Basis
     Number of BAUs [extract using object@BAUs]: 134
     Number of observations [extract using object@Z]: 50
     Mean obs. variance at BAU level [extract using object@Ve]: 0.01
     Fine-scale variance proportionality constant [extract using object@sigma2fshat]: 0.1211177
     Dimensions of C in Z = C*Y + e [extract using object@Cmat]: c(50L, 134L)
     Dimensions of S in Y = X*alpha + S*eta + delta [extract using object@S]: c(50L, 18L)
     Number of covariates: 1
    
     Normalising basis function evaluations at BAU level ...
     Binning data ...
     Binned data in 0.01 seconds
    
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     |======================================================================| 100%
     Maximum EM iterations reached
     Normalising basis function evaluations at BAU level ...
     Binning data ...
     Binned data in 0.08 seconds
    
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     Maximum EM iterations reached
     Normalising basis function evaluations at BAU level ...
     Binning data ...
     Binned data in 0.03 seconds
     Binned data in 0.03 seconds
     Binned data in 0.03 seconds
     Binned data in 0.03 seconds
     Binned data in 0.03 seconds
    
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     |======================================================================| 100%
     Maximum EM iterations reached
     [1] "Entering test_basis.R"
     Number of basis functions: 50
     Number of resolutions: 1
     Type of manifold: surface of sphere
     Dimension of manifold: 2
     First basis function:
     function (s) { stopifnot(ncol(s) == dimensions(manifold)) dist_sq <- distance(manifold, s, mu)^2 exp(-0.5 * dist_sq/(std^2)) }
     Number of basis functions: 50
     Number of resolutions: 1
     Type of manifold: surface of sphere
     Dimension of manifold: 2
     First basis function:
     function (s) { stopifnot(ncol(s) == dimensions(manifold)) dist_sq <- distance(manifold, s, mu)^2 exp(-0.5 * dist_sq/(std^2)) }
     Averaging over polygons...
     First set of basis functions
     ----------------------------
     Number of basis functions: 10
     Number of resolutions: 1
     Type of manifold: surface of sphere
     Dimension of manifold: 2
     First basis function:
     function (s) { stopifnot(ncol(s) == dimensions(manifold)) y <- distance(manifold, s, c) (1 - (y/R)^2)^2 * (y < R) }
    
    
     Second set of basis functions
     -----------------------------
     Number of basis functions: 3
     Number of resolutions: 1
     Type of manifold: real_line
     Dimension of manifold: 1
     First basis function:
     function (s) { stopifnot(ncol(s) == dimensions(manifold)) y <- distance(manifold, s, c) (1 - (y/R)^2)^2 * (y < R) }
    
    
     Total number of basis functions: 30First set of basis functions
     ----------------------------
     Number of basis functions: 10
     Number of resolutions: 1
     Type of manifold: surface of sphere
     Dimension of manifold: 2
     First basis function:
     function (s) { stopifnot(ncol(s) == dimensions(manifold)) y <- distance(manifold, s, c) (1 - (y/R)^2)^2 * (y < R) }
    
    
     Second set of basis functions
     -----------------------------
     Number of basis functions: 3
     Number of resolutions: 1
     Type of manifold: real_line
     Dimension of manifold: 1
     First basis function:
     function (s) { stopifnot(ncol(s) == dimensions(manifold)) y <- distance(manifold, s, c) (1 - (y/R)^2)^2 * (y < R) }
    
    
     Total number of basis functions: 30[1] "Entering test_domains.R"
     Type of manifold: surface of sphere
     Radius of sphere: 6371
     Dimension of manifold: 2
     Distance function:
     function (x1, x2 = NULL) dist_sphere(x1, x2, R = R)
     Type of manifold: surface of sphere
     Radius of sphere: 6371
     Dimension of manifold: 2
     Distance function:
     function (x1, x2 = NULL) dist_sphere(x1, x2, R = R)
     Type of manifold: plane
     Dimension of manifold: 2
     Distance function:
     function (x1, x2) distR(x1, x2)
     Type of manifold: plane
     Dimension of manifold: 2
     Distance function:
     function (x1, x2) distR(x1, x2)
     Type of manifold: real_line
     Dimension of manifold: 1
     Distance function:
     function (x1, x2) distR(x1, x2)
     Type of manifold: real_line
     Dimension of manifold: 1
     Distance function:
     function (x1, x2) distR(x1, x2)
     Type of manifold: STplane
     Dimension of manifold: 3
     Distance function:
     function (x1, x2) distR(x1, x2)
     Type of manifold: STplane
     Dimension of manifold: 3
     Distance function:
     function (x1, x2) distR(x1, x2)
     Type of manifold: STplane
     Dimension of manifold: 3
     Distance function:
     function (x1, x2) distR(x1, x2)
     Type of manifold: STplane
     Dimension of manifold: 3
     Distance function:
     function (x1, x2) distR(x1, x2)
     ... Fitting variogram for estimating measurement error
     sigma2e estimate = 0.03310956
     Averaging over polygons...
     Normalising basis function evaluations at BAU level ...
     Binning data ...
     Binned data in 0.07 seconds
    
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     |======================================================== | 80%Minimum tolerance reached
    
     Constructing BAUs...
     Generating basis functions...
     ...Automatically choosing number of functions...
     Modelling using 819 basis functions
     Constructing SRE model...
     Normalising basis function evaluations at BAU level ...
     ... Fitting variogram for estimating measurement error
     sigma2e estimate = 0.2238202
     Binning data ...
     Binned data in 0.34 seconds
     Fitting SRE model...
    
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     Maximum EM iterations reached
     == testthat results ===========================================================
     [ OK: 188 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 2 ]
     1. Error: plane_BAUs (@test_BAUs.R#36)
     2. Error: SpaceTime_BAUs (@test_BAUs.R#142)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 0.2.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘dggrids’ ‘INLA’
Flavor: r-oldrel-osx-x86_64